Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4678 482 2e-131 seq4810 147 2e-30 seq4863 136 4e-27 seq4644 132 5e-26 seq4765 122 9e-23 >seq4678 Length=1229792 Score = 482 bits (534), Expect = 2e-131 Identities = 586/789 (74%), Gaps = 16/789 (2%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||||||||| || ||||||||||| || ||||||||| |||||||||| | ||||| Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCGACT 1146883 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | ||| | || || |||| ||||| |||||| || ||||||||||| || |||| Sbjct 1146882 GGCATCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTTGCCG 1146823 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTG 116833 || ||| || || ||||||||||||||||| ||||| ||| || |||||||| ||| | Sbjct 1146822 CCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGC-CAGGAGGTACAGATC 1146764 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 ||||||| || ||||| || ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 1146763 ACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGATG 1146704 Query 116894 TATTCGACCCTCATCGACACGTACGTGCG-----CTCTTCGGAGGAGAAGCTCCGTTTGT 116948 || || |||||||| ||| | || | | | | || ||| || ||| Sbjct 1146703 TACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG-GAATATC----TGT 1146649 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGG 117007 | || ||||| ||||| |||||| ||| ||| | ||||| || ||||| ||| |||| Sbjct 1146648 TCAATGCCATTGAGACCATGCCG-GCGGTGAAGCGCAAGGCTGACTGGGCCCTGTCCTGG 1146590 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 ||| | || |||| ||| || |||||| | | || || || |||||||||||| Sbjct 1146589 ATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGAGGGC 1146530 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 | ||||| ||||| || ||| |||| || ||||| ||||| |||||||| ||||| Sbjct 1146529 ATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCT 1146470 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || |||| ||| ||| ||||| |||||| | || ||||||||||| || |||||||| Sbjct 1146469 GGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGTGACTTTGCG 1146410 Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATCGT 117246 || ||||| ||||| |||||||||||||||| ||| | |||| ||| |||||| | Sbjct 1146409 GTGCTGATGTTCCAGCATCTGGTGCAGCGACCGAG-GCGCGAGCGCATCATCGAGATCAT 1146351 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | |||||| || | ||| |||||| ||||||||||| || |||||||| |||| | Sbjct 1146350 CCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCCGGTTAATCTGAT 1146291 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || || || ||||||||| ||||| ||||| || ||||| | |||||| | Sbjct 1146290 CGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTCTGCTGGT 1146231 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCAT 117426 |||||||| || | ||| ||||||||| || ||| | |||| ||| | | || Sbjct 1146230 CGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTCAACTTCATGGAGATGAT 1146171 Query 117427 CTCCTTGGA 117435 ||| |||| Sbjct 1146170 CTCGCTGGA 1146162 >seq4810 Length=1195048 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || ||||| || || Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 316820 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316878 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| |||||| | ||| ||||| Sbjct 316879 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 316938 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| ||||| | || |||| || | ||||||| Sbjct 316939 CATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGCGGCG 316988 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || | || ||||| || |||||| | || ||||| || Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | |||| |||||| || || | ||||| |||||||| ||| | || Sbjct 316361 TCCGACACAATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 316419 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || || || |||||||| |||| |||||||| ||| || Sbjct 316420 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTA 316479 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| |||| || || Sbjct 316480 CAACATCCAGAAGGAGTCCACCCTTCA 316506 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || ||||| || || Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 316592 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316650 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | ||||| ||| |||||||| Sbjct 316651 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAA 316710 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 316711 CATCCAGAAGGAGTCGACCCTTCA 316734 >seq4863 Length=1240122 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || || || | | Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | || ||| Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 1063998 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||| || |||||||||| Sbjct 1063999 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1064058 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| | ||| || | || ||| Sbjct 1064059 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGC 1064106 >seq4644 Length=1132839 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || ||||| || || || || || || ||||||||| | || || || |||| Sbjct 752079 AATGCAGATCTTCGTGAAGACTCTTACCGGAAAGACCATCACCTTGGAGGTGGA-GCCAT 752137 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | | | | | |||| || || | ||||| ||||| ||||| | || | Sbjct 752138 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 752197 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 752198 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTCTCCGACTACA 752257 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| |||| || || Sbjct 752258 ACATCCAGAAGGAGTCCACCCTCCA 752282 Score = 132 bits (146), Expect = 5e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || || || || || || || || || ||||||||| | || || || |||| Sbjct 752307 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTGGA-GCCAT 752365 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | | | | | |||| || || | ||||| ||||| ||||| | || | Sbjct 752366 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 752425 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 752426 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 752485 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||| | || |||||| | ||| Sbjct 752486 ACATCCAGAAGGAGTCAACCCTGCATTTGGTG 752517 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || ||||| | || || || ||||||||| | || || ||| | Sbjct 751621 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTT 751680 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | |||| | | | | | |||| || || | ||||| ||||| ||||| | || | Sbjct 751681 CGGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751740 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 751741 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 751800 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| |||| || || Sbjct 751801 ACATCCAGAAGGAGTCCACCCTCCA 751825 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || || || || || || || || || |||||||| | || || || |||| Sbjct 752535 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGA-GCCAT 752593 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | | | | | |||| ||||| | ||||| ||||| || ||| | || | Sbjct 752594 CCGACACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATC 752653 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 752654 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 752713 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || || || Sbjct 752714 ACATCCAGAAGGAGTCAACTCTCCA 752738 Score = 109 bits (120), Expect = 6e-19 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCA 40747 |||||| || || || || || || || | ||| |||||||| | || || || |||| Sbjct 751850 AATGCAGATCTTTGTGAAGACTCTTACTCGGAAAGACCATCACTCTGGAAGTGGA-GCCA 751908 Query 40748 -CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | |||| || || | ||||| ||||| ||||| | || Sbjct 751909 TCCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGAT 751968 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||| | ||| ||||| |||||||| || | ||||||||| |||||| Sbjct 751969 CAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCAGACTAC 752028 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || || || Sbjct 752029 AACATCCAGAAGGAGTCAACTCTCCA 752054 >seq4765 Length=3541379 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | Sbjct 2921629 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2921570 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| |||| | || |||| |||||||| || || || | || Sbjct 2921569 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2921510 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 2921509 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 2921450 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||| ||||||||| | || |||| | ||| | ||| | | || |||| Sbjct 2921449 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTCCGCCTTCGTGGTGGCG 2921398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515186090726160