Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 482 2e-131
seq4810 147 2e-30
seq4863 136 4e-27
seq4644 132 5e-26
seq4765 122 9e-23
>seq4678
Length=1229792
Score = 482 bits (534), Expect = 2e-131
Identities = 586/789 (74%), Gaps = 16/789 (2%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||||||||| || ||||||||||| || ||||||||| |||||||||| | |||||
Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCGACT 1146883
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
|| | ||| | || || |||| ||||| |||||| || ||||||||||| || ||||
Sbjct 1146882 GGCATCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTTGCCG 1146823
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTG 116833
|| ||| || || ||||||||||||||||| ||||| ||| || |||||||| ||| |
Sbjct 1146822 CCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGC-CAGGAGGTACAGATC 1146764
Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893
||||||| || ||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1146763 ACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGATG 1146704
Query 116894 TATTCGACCCTCATCGACACGTACGTGCG-----CTCTTCGGAGGAGAAGCTCCGTTTGT 116948
|| || |||||||| ||| | || | | | | || ||| || |||
Sbjct 1146703 TACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG-GAATATC----TGT 1146649
Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGG 117007
| || ||||| ||||| |||||| ||| ||| | ||||| || ||||| ||| ||||
Sbjct 1146648 TCAATGCCATTGAGACCATGCCG-GCGGTGAAGCGCAAGGCTGACTGGGCCCTGTCCTGG 1146590
Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067
||| | || |||| ||| || |||||| | | || || || ||||||||||||
Sbjct 1146589 ATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGAGGGC 1146530
Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127
| ||||| ||||| || ||| |||| || ||||| ||||| |||||||| |||||
Sbjct 1146529 ATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCT 1146470
Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187
|| |||| ||| ||| ||||| |||||| | || ||||||||||| || ||||||||
Sbjct 1146469 GGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGTGACTTTGCG 1146410
Query 117188 TGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATCGT 117246
|| ||||| ||||| |||||||||||||||| ||| | |||| ||| |||||| |
Sbjct 1146409 GTGCTGATGTTCCAGCATCTGGTGCAGCGACCGAG-GCGCGAGCGCATCATCGAGATCAT 1146351
Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306
| |||||| || | ||| |||||| ||||||||||| || |||||||| |||| |
Sbjct 1146350 CCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCCGGTTAATCTGAT 1146291
Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366
|| | || || || ||||||||| ||||| ||||| || ||||| | |||||| |
Sbjct 1146290 CGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTCTGCTGGT 1146231
Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCAT 117426
|||||||| || | ||| ||||||||| || ||| | |||| ||| | | ||
Sbjct 1146230 CGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTCAACTTCATGGAGATGAT 1146171
Query 117427 CTCCTTGGA 117435
||| ||||
Sbjct 1146170 CTCGCTGGA 1146162
>seq4810
Length=1195048
Score = 147 bits (162), Expect = 2e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||||||| | || ||||| || ||
Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| |||||||| ||| | |||||
Sbjct 316820 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316878
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| |||| |||||| | ||| |||||
Sbjct 316879 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 316938
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||||||||||| |||| ||||| | || |||| || | |||||||
Sbjct 316939 CATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGCGGCG 316988
Score = 136 bits (150), Expect = 4e-27
Identities = 156/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||| ||||| || || | || ||||| || |||||| | || ||||| ||
Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | |||| |||||| || || | ||||| |||||||| ||| | ||
Sbjct 316361 TCCGACACAATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 316419
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| || || || |||||||| |||| |||||||| ||| ||
Sbjct 316420 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTA 316479
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||||| |||| || ||
Sbjct 316480 CAACATCCAGAAGGAGTCCACCCTTCA 316506
Score = 127 bits (140), Expect = 2e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||||||| | || ||||| || ||
Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| |||||| || || | ||||| |||||||| ||| | |||||
Sbjct 316592 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316650
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| || | ||||| ||| ||||||||
Sbjct 316651 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAA 316710
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || || ||
Sbjct 316711 CATCCAGAAGGAGTCGACCCTTCA 316734
>seq4863
Length=1240122
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| ||||| ||||| ||||||||| | || || || | |
Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||| ||| | || |||
Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 1063998
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || ||||| |||||||| || | ||||| || ||||||||||
Sbjct 1063999 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1064058
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| | || ||||| | ||| | ||| || | || |||
Sbjct 1064059 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGC 1064106
>seq4644
Length=1132839
Score = 132 bits (146), Expect = 5e-26
Identities = 154/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747
|||||| || ||||| || || || || || || ||||||||| | || || || ||||
Sbjct 752079 AATGCAGATCTTCGTGAAGACTCTTACCGGAAAGACCATCACCTTGGAGGTGGA-GCCAT 752137
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||||| | | | | | |||| || || | ||||| ||||| ||||| | || |
Sbjct 752138 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 752197
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 752198 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTCTCCGACTACA 752257
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| |||| || ||
Sbjct 752258 ACATCCAGAAGGAGTCCACCCTCCA 752282
Score = 132 bits (146), Expect = 5e-26
Identities = 158/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747
|||||| || || || || || || || || || ||||||||| | || || || ||||
Sbjct 752307 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTGGA-GCCAT 752365
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||||| | | | | | |||| || || | ||||| ||||| ||||| | || |
Sbjct 752366 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 752425
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 752426 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 752485
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||||| | || |||||| | |||
Sbjct 752486 ACATCCAGAAGGAGTCAACCCTGCATTTGGTG 752517
Score = 127 bits (140), Expect = 2e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || || || ||||| | || || || ||||||||| | || || ||| |
Sbjct 751621 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTT 751680
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
| |||| | | | | | |||| || || | ||||| ||||| ||||| | || |
Sbjct 751681 CGGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751740
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 751741 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 751800
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| |||| || ||
Sbjct 751801 ACATCCAGAAGGAGTCCACCCTCCA 751825
Score = 123 bits (136), Expect = 3e-23
Identities = 152/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747
|||||| || || || || || || || || || |||||||| | || || || ||||
Sbjct 752535 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGA-GCCAT 752593
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||||| | | | | | |||| ||||| | ||||| ||||| || ||| | || |
Sbjct 752594 CCGACACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATC 752653
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 752654 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 752713
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| | || || ||
Sbjct 752714 ACATCCAGAAGGAGTCAACTCTCCA 752738
Score = 109 bits (120), Expect = 6e-19
Identities = 150/206 (73%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCA 40747
|||||| || || || || || || || | ||| |||||||| | || || || ||||
Sbjct 751850 AATGCAGATCTTTGTGAAGACTCTTACTCGGAAAGACCATCACTCTGGAAGTGGA-GCCA 751908
Query 40748 -CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | | |||| || || | ||||| ||||| ||||| | ||
Sbjct 751909 TCCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGAT 751968
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || ||||| | ||| ||||| |||||||| || | ||||||||| ||||||
Sbjct 751969 CAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCAGACTAC 752028
Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||||| | || || ||
Sbjct 752029 AACATCCAGAAGGAGTCAACTCTCCA 752054
>seq4765
Length=3541379
Score = 122 bits (134), Expect = 9e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||||||||| |||||||| | || |||||| |
Sbjct 2921629 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2921570
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | ||| |||| | || |||| |||||||| || || || | ||
Sbjct 2921569 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2921510
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| || ||||| |||||||| || | ||||||||| |||||
Sbjct 2921509 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 2921450
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||| ||||||||| | || |||| | ||| | ||| | | || ||||
Sbjct 2921449 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTCCGCCTTCGTGGTGGCG 2921398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515186090726160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |