Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 105 1e-17
seq4991 87.8 3e-12
>seq4212
Length=105517
Score = 105 bits (116), Expect = 1e-17
Identities = 534/799 (67%), Gaps = 68/799 (9%)
Strand=Plus/Minus
Query 228284 ATAATATAAATATT-TCATCATTACCaaaaacattaattaaattaaatattagttcatgt 228342
|||||||||||| | | | | || || || || ||| | || ||||| || | |||
Sbjct 105224 ATAATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATA-TACAT-- 105169
Query 228343 aatataaaaaatactaattttataattaatttagataatttGAAAGAAT-TAGATATATC 228401
|||||||| |||| ||| ||||| |||| || ||||| | ||| ||| || ||| ||
Sbjct 105168 AATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATA 105111
Query 228402 TAGA-AATTT---TAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTA-AAT 228456
|| | ||| | ||||||||||| | || | || | || | || || | || |||
Sbjct 105110 TAAATAATATACATAATATAAATAAT--ATAAATAATATAAATAATATACATAATATAAT 105053
Query 228457 ATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGAA 228516
|| | | | | ||||||| |||| ||| ||||| |||| || ||||| | ||| ||
Sbjct 105052 ATAAT-ATAAATAATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAA 104995
Query 228517 T-TAGATATATCTAGA-AATTT---TAATATAAATATTTCATCATTACCAAAATCATTGA 228571
| || ||| || || | ||| | ||||||||||| | || | || || | | |
Sbjct 104994 TATAAATA-ATATAAATAATATAAATAATATAAATAAT-----ATAAATAATATAAATAA 104941
Query 228572 T-TACATTAAATAT-TAATTCATGTTATATAAAACACACTAATTTTATAAA-TGATTTAT 228628
| || || | ||| |||| | | ||||||| | | ||| |||||| | || ||
Sbjct 104940 TATAAATAATATAAATAATATAAATAATATAAATAATATAAATAATATAAAATAATATAA 104881
Query 228629 ATAATTTGAAGGAAT-TGGATA-TATCTAGAAATTA--TAATATAAATATTTCATCATTA 228684
||||| | ||| ||| | ||| ||| | || || ||||||||||| | || | ||
Sbjct 104880 ATAATAT-AAGTAATATAAATAATATAAATAATATAAATAATATAAATAAT--ATAAATA 104824
Query 228685 CCA-AAATCAT-TAATCAAATTAAATATTAGTGATTGCGATATTAAAAATACTAATTTTA 228742
| |||| || ||| || || ||| || || |||| || |||| ||| ||
Sbjct 104823 ATATAAATAATATAAATAATATACATAATATAAATA---ATATAAATAATATAAATAATA 104767
Query 228743 TAAATGATTTAGATAATTTGAA----AGAATTAGATATATCTAACAATTATAATATAAAT 228798
||||| || || ||||| | || | || || |||||| ||| | |||||||||||
Sbjct 104766 TAAATAATATAAATAATATAAATAATATAAATA-ATATATATAATATAAATAATATAAAT 104708
Query 228799 ATTTCATCATTACCAAAAACATTGACTACATTAAAT-ATTAGTTCATGTAATATAAAAAA 228857
| | || | || | ||| | | || || | || | || | | ||||||||| ||
Sbjct 104707 AAT--ATAAATAATATAAATAAT--ATAAATAATATAAATAATATAAATAATATAAATAA 104652
Query 228858 TACtaattttataattaatttagataatttgaaagaat-tagatatatctaaaaatttta 228916
|| ||| ||||| |||| || ||||| | ||| ||| || ||| || ||| | | ||
Sbjct 104651 TATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATACAAATAATATA 104594
Query 228917 atataa-atatttCATCATTACCAAAATCATTGAT-TACATTAAAT-ATTAATTCATGTT 228973
|||||| ||| | || || | || || | | || || || | || | |||| | |
Sbjct 104593 ATATAATATAAATAAT-ATAAATAATATAAATAATATAAATAATATAAATAATATAAATA 104535
Query 228974 ATATAAACCATACTAATTTTATAAATGATTTATATAATTTGAAAGAAT-TAGATATATCT 229032
||||||| ||| ||| ||||||| || || ||||| | ||| ||| || ||| || |
Sbjct 104534 ATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATAT 104477
Query 229033 AACAATTATAATATAAATA 229051
|| ||||||||||||
Sbjct 104476 AA-----ATAATATAAATA 104463
>seq4991
Length=410710
Score = 87.8 bits (96), Expect = 3e-12
Identities = 439/658 (67%), Gaps = 75/658 (11%)
Strand=Plus/Minus
Query 8992 TAATATTTTAATATTAATTAATGGTTCTAAAAATTTAAAATCTATAATATCACAATCTTT 9051
||||||||||||||| ||||| || ||| | ||||| || | |||||| ||| |||
Sbjct 190169 TAATATTTTAATATT--TTAAT-ATTTTAATATTTTAATAT-TTTAATATTTTAATATTT 190114
Query 9052 ACAGTAAAATCCATTTA----TTGATATTGGCAATTT-ACATTCAGATATATTTGAATAT 9106
| | ||| ||||| || ||||| |||| | ||| | |||||| |||||
Sbjct 190113 AATATTTAAT--ATTTAATATTTAATATTTAATATTTAATATTTA---ATATTT-AATAT 190060
Query 9107 GTATTATATGATATATCTAATAATTGTAGATTAGGtaaattttctaaaaatttaaaatct 9166
|| |||| |||| ||||| || | || ||| ||| || |||| ||| |
Sbjct 190059 TTA--ATATTTAATATTTAATATTT----AATATTTAATATTT---AATATTT--AATAT 190011
Query 9167 ataatattacatttttcacaatttaaattttttatatattCGGGTTTATAATGTGAAA-- 9224
||||||| || ||| | | || ||| ||| |||| || |||| || | | |
Sbjct 190010 TTAATATTTAATATTTAATA--TTTAATATTTAATAT-TTAATATTTAATATTTAATATT 189954
Query 9225 -AATAGTT-ATATTGTAT-TGGTATATTTAATTGATAAT-TATAATATTGAAATATTTAA 9280
|||| || ||||| || | ||||||||| |||| | ||||||| |||||||||
Sbjct 189953 TAATATTTAATATTTAATATTTAATATTTAATATTTAATATTTAATATT-TAATATTTAA 189895
Query 9281 CATGTTTTTGCTAATTTATGCTTATTCTCATTATCTAAATATGTTAATATATCCTCATAA 9340
| |||| || |||| |||| | | ||| | ||||| ||||||| | | |||
Sbjct 189894 TA---TTTTAATATTTTA---ATATT-TTAATATTTTAATATTTTAATATTT--TAATAT 189844
Query 9341 Caatataaattaatattattcat-tttttattattaatgtaaaatatgtaaaatttcaaa 9399
||| |||||||| || || |||||| |||| | ||| || | ||| ||||
Sbjct 189843 TTTAATATTTTAATATTTTTAATATTTTTAATATT--TTTAATATTTTTAATATTT---T 189789
Query 9400 aaatattgtatttatatataatggttttaa-aaaattaaagtctataatattacatttag 9458
|||||| | ||| | |||| |||||| | |||| | | ||||||| ||||
Sbjct 189788 TAATATTTTTAATATTTTTAATATTTTTAATATTTTTAATATTTTTAATATT---TTTAA 189732
Query 9459 gatttttaaatatatctatattt---gatttttattttttcacattaagtaattatttta 9515
|||||| ||||| | |||||| ||||| || |||| | ||| | | |||||||
Sbjct 189731 TATTTTT-AATATTTTAATATTTTAATATTTTAATATTTTAATATT---TTAATATTTTA 189676
Query 9516 ----tttaatgatggtggtaatttatatttattaataactt--tttttttATATTCAGAT 9569
|||||| || | || |||| || | |||||| || | |||| ||||| ||
Sbjct 189675 ATATTTTAAT-ATTTTAATATTTTA-ATATTTTAATATTTTAATATTTTAATATTTTAAT 189618
Query 9570 AGAGTTAATATTTGTAAGTTTATTAATGATTCTAAAAAATTAA-ATTTTTCTATTTTA 9626
| ||||||||| ||| | | ||||| ||| ||| | |||| ||||| |||||||
Sbjct 189617 A-TTTTAATATTT-TAA-TATTTTAAT-ATTTTAATATTTTAATATTTTAATATTTTA 189564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755407452508800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |