Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4212 105 1e-17 seq4991 87.8 3e-12 >seq4212 Length=105517 Score = 105 bits (116), Expect = 1e-17 Identities = 534/799 (67%), Gaps = 68/799 (9%) Strand=Plus/Minus Query 228284 ATAATATAAATATT-TCATCATTACCaaaaacattaattaaattaaatattagttcatgt 228342 |||||||||||| | | | | || || || || ||| | || ||||| || | ||| Sbjct 105224 ATAATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATA-TACAT-- 105169 Query 228343 aatataaaaaatactaattttataattaatttagataatttGAAAGAAT-TAGATATATC 228401 |||||||| |||| ||| ||||| |||| || ||||| | ||| ||| || ||| || Sbjct 105168 AATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATA 105111 Query 228402 TAGA-AATTT---TAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTA-AAT 228456 || | ||| | ||||||||||| | || | || | || | || || | || ||| Sbjct 105110 TAAATAATATACATAATATAAATAAT--ATAAATAATATAAATAATATACATAATATAAT 105053 Query 228457 ATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGAA 228516 || | | | | ||||||| |||| ||| ||||| |||| || ||||| | ||| || Sbjct 105052 ATAAT-ATAAATAATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAA 104995 Query 228517 T-TAGATATATCTAGA-AATTT---TAATATAAATATTTCATCATTACCAAAATCATTGA 228571 | || ||| || || | ||| | ||||||||||| | || | || || | | | Sbjct 104994 TATAAATA-ATATAAATAATATAAATAATATAAATAAT-----ATAAATAATATAAATAA 104941 Query 228572 T-TACATTAAATAT-TAATTCATGTTATATAAAACACACTAATTTTATAAA-TGATTTAT 228628 | || || | ||| |||| | | ||||||| | | ||| |||||| | || || Sbjct 104940 TATAAATAATATAAATAATATAAATAATATAAATAATATAAATAATATAAAATAATATAA 104881 Query 228629 ATAATTTGAAGGAAT-TGGATA-TATCTAGAAATTA--TAATATAAATATTTCATCATTA 228684 ||||| | ||| ||| | ||| ||| | || || ||||||||||| | || | || Sbjct 104880 ATAATAT-AAGTAATATAAATAATATAAATAATATAAATAATATAAATAAT--ATAAATA 104824 Query 228685 CCA-AAATCAT-TAATCAAATTAAATATTAGTGATTGCGATATTAAAAATACTAATTTTA 228742 | |||| || ||| || || ||| || || |||| || |||| ||| || Sbjct 104823 ATATAAATAATATAAATAATATACATAATATAAATA---ATATAAATAATATAAATAATA 104767 Query 228743 TAAATGATTTAGATAATTTGAA----AGAATTAGATATATCTAACAATTATAATATAAAT 228798 ||||| || || ||||| | || | || || |||||| ||| | ||||||||||| Sbjct 104766 TAAATAATATAAATAATATAAATAATATAAATA-ATATATATAATATAAATAATATAAAT 104708 Query 228799 ATTTCATCATTACCAAAAACATTGACTACATTAAAT-ATTAGTTCATGTAATATAAAAAA 228857 | | || | || | ||| | | || || | || | || | | ||||||||| || Sbjct 104707 AAT--ATAAATAATATAAATAAT--ATAAATAATATAAATAATATAAATAATATAAATAA 104652 Query 228858 TACtaattttataattaatttagataatttgaaagaat-tagatatatctaaaaatttta 228916 || ||| ||||| |||| || ||||| | ||| ||| || ||| || ||| | | || Sbjct 104651 TATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATACAAATAATATA 104594 Query 228917 atataa-atatttCATCATTACCAAAATCATTGAT-TACATTAAAT-ATTAATTCATGTT 228973 |||||| ||| | || || | || || | | || || || | || | |||| | | Sbjct 104593 ATATAATATAAATAAT-ATAAATAATATAAATAATATAAATAATATAAATAATATAAATA 104535 Query 228974 ATATAAACCATACTAATTTTATAAATGATTTATATAATTTGAAAGAAT-TAGATATATCT 229032 ||||||| ||| ||| ||||||| || || ||||| | ||| ||| || ||| || | Sbjct 104534 ATATAAATAATATAAATAATATAAATAATATAAATAATAT-AAATAATATAAATA-ATAT 104477 Query 229033 AACAATTATAATATAAATA 229051 || |||||||||||| Sbjct 104476 AA-----ATAATATAAATA 104463 >seq4991 Length=410710 Score = 87.8 bits (96), Expect = 3e-12 Identities = 439/658 (67%), Gaps = 75/658 (11%) Strand=Plus/Minus Query 8992 TAATATTTTAATATTAATTAATGGTTCTAAAAATTTAAAATCTATAATATCACAATCTTT 9051 ||||||||||||||| ||||| || ||| | ||||| || | |||||| ||| ||| Sbjct 190169 TAATATTTTAATATT--TTAAT-ATTTTAATATTTTAATAT-TTTAATATTTTAATATTT 190114 Query 9052 ACAGTAAAATCCATTTA----TTGATATTGGCAATTT-ACATTCAGATATATTTGAATAT 9106 | | ||| ||||| || ||||| |||| | ||| | |||||| ||||| Sbjct 190113 AATATTTAAT--ATTTAATATTTAATATTTAATATTTAATATTTA---ATATTT-AATAT 190060 Query 9107 GTATTATATGATATATCTAATAATTGTAGATTAGGtaaattttctaaaaatttaaaatct 9166 || |||| |||| ||||| || | || ||| ||| || |||| ||| | Sbjct 190059 TTA--ATATTTAATATTTAATATTT----AATATTTAATATTT---AATATTT--AATAT 190011 Query 9167 ataatattacatttttcacaatttaaattttttatatattCGGGTTTATAATGTGAAA-- 9224 ||||||| || ||| | | || ||| ||| |||| || |||| || | | | Sbjct 190010 TTAATATTTAATATTTAATA--TTTAATATTTAATAT-TTAATATTTAATATTTAATATT 189954 Query 9225 -AATAGTT-ATATTGTAT-TGGTATATTTAATTGATAAT-TATAATATTGAAATATTTAA 9280 |||| || ||||| || | ||||||||| |||| | ||||||| ||||||||| Sbjct 189953 TAATATTTAATATTTAATATTTAATATTTAATATTTAATATTTAATATT-TAATATTTAA 189895 Query 9281 CATGTTTTTGCTAATTTATGCTTATTCTCATTATCTAAATATGTTAATATATCCTCATAA 9340 | |||| || |||| |||| | | ||| | ||||| ||||||| | | ||| Sbjct 189894 TA---TTTTAATATTTTA---ATATT-TTAATATTTTAATATTTTAATATTT--TAATAT 189844 Query 9341 Caatataaattaatattattcat-tttttattattaatgtaaaatatgtaaaatttcaaa 9399 ||| |||||||| || || |||||| |||| | ||| || | ||| |||| Sbjct 189843 TTTAATATTTTAATATTTTTAATATTTTTAATATT--TTTAATATTTTTAATATTT---T 189789 Query 9400 aaatattgtatttatatataatggttttaa-aaaattaaagtctataatattacatttag 9458 |||||| | ||| | |||| |||||| | |||| | | ||||||| |||| Sbjct 189788 TAATATTTTTAATATTTTTAATATTTTTAATATTTTTAATATTTTTAATATT---TTTAA 189732 Query 9459 gatttttaaatatatctatattt---gatttttattttttcacattaagtaattatttta 9515 |||||| ||||| | |||||| ||||| || |||| | ||| | | ||||||| Sbjct 189731 TATTTTT-AATATTTTAATATTTTAATATTTTAATATTTTAATATT---TTAATATTTTA 189676 Query 9516 ----tttaatgatggtggtaatttatatttattaataactt--tttttttATATTCAGAT 9569 |||||| || | || |||| || | |||||| || | |||| ||||| || Sbjct 189675 ATATTTTAAT-ATTTTAATATTTTA-ATATTTTAATATTTTAATATTTTAATATTTTAAT 189618 Query 9570 AGAGTTAATATTTGTAAGTTTATTAATGATTCTAAAAAATTAA-ATTTTTCTATTTTA 9626 | ||||||||| ||| | | ||||| ||| ||| | |||| ||||| ||||||| Sbjct 189617 A-TTTTAATATTT-TAA-TATTTTAAT-ATTTTAATATTTTAATATTTTAATATTTTA 189564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755407452508800