Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4765 242 3e-59 seq4863 140 3e-28 seq4810 129 5e-25 seq4644 116 3e-21 >seq4765 Length=3541379 Score = 242 bits (268), Expect = 3e-59 Identities = 723/1107 (65%), Gaps = 30/1107 (3%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||||||||| |||| | |||| | || || || || ||||| | |||||||| || || Sbjct 3010798 GTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGT 3010739 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 ||| || || ||||| ||||||||||||| | || | || |||| || Sbjct 3010738 TTTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTC 3010679 Query 132998 GGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCAT 133057 || ||| | || | ||||||||||||||| || || | | | || || |||||||| Sbjct 3010678 AGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCAT 3010619 Query 133058 GTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTG 133117 || || | | || ||||||||| |||||||| | |||| |||| ||| Sbjct 3010618 TTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCGAACATTCTG 3010559 Query 133118 TGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCC--AAA--ATCTTGTTGCGCA 133173 || || | || || ||||| | || || |||| ||| |||| ||| || Sbjct 3010558 GGGAATGGCCTCGATATTCTGGATAGAGCCA----CGGCTGGAAATGATCTGGTTCTTCA 3010503 Query 133174 ATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTT 133233 || | | | ||| || || |||| | | || | ||||||||||| | Sbjct 3010502 TGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCT 3010443 Query 133234 GAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATT 133293 | || ||||||| ||||||||| | ||| | ||||| ||| |||| ||||| |||| Sbjct 3010442 GGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATT 3010383 Query 133294 CGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGT 133353 |||||||||| | |||||| || || | |||||||||||| ||||| | || ||||| Sbjct 3010382 CGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGT 3010323 Query 133354 TTCTTACGCCGTACTTGTTTAT-GTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTTG 133412 |||| ||||||| || || || | | | || || | ||||||||| || || || Sbjct 3010322 TTCTAACGCCGTGTTTCTTGATCGATTC-CTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 133413 GAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACC 133472 | || | | ||| | ||| | || | || ||| ||||||| Sbjct 3010263 G-------------GT--ACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACG 3010219 Query 133473 GGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCC 133532 || ||| || ||| | |||||| || || | || | |||||| || || || || ||| Sbjct 3010218 GGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCC 3010159 Query 133533 AAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTA 133592 | || || | || || ||||| ||| | || | || | || || ||||| Sbjct 3010158 AGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTT 3010099 Query 133593 TCGTAGGCG-ATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGAT 133651 ||||||| | || || | |||| || || ||||| | ||||| | ||| | ||| || Sbjct 3010098 TCGTAGGGGAATCTC-ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAAT 3010040 Query 133652 GGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGAT 133711 ||| ||||| | |||| || | ||| | | |||||| | ||||| ||| || Sbjct 3010039 GGGGCGATGCCTCATATTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAAT 3009980 Query 133712 GATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAA 133771 |||||||| ||||| | | | | | || || | | |||||| | | || | Sbjct 3009979 AATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTA 3009920 Query 133772 TGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGC 133831 ||||| || | |||| || || |||||| || || || || || || ||||| Sbjct 3009919 CGTCTTTTCG--GGCGTC-ACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGC 3009863 Query 133832 CGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGT 133891 |||||| | | |||| |||||| || | ||| || |||||||| |||||||| Sbjct 3009862 GATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGT 3009803 Query 133892 GCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCC 133951 ||||| ||| | |||||||| | ||||| ||||||| | ||||||||||| Sbjct 3009802 GCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATT 3009743 Query 133952 GCCGGTTTCGACGTTGGTCTCGACGAT 133978 ||| || || || | | ||||| ||| Sbjct 3009742 GCCAGTCTCCACCTGCGCCTCGATGAT 3009716 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || |||||||| || || | ||||| ||| || Sbjct 2921417 CACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 2921476 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| |||||||||||||| ||||| || || || ||||| Sbjct 2921477 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 2921536 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | ||||| ||||||| |||||||| | || | || || Sbjct 2921537 AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 2921596 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 2921597 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626 >seq4863 Length=1240122 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || |||||| |||||| Sbjct 1064088 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 1064029 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| |||||||||||||| || || |||||||||||||| Sbjct 1064028 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1063969 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| ||| ||||| | ||| | || || Sbjct 1063968 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTT 1063909 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||||| || ||||| || || |||||||||| Sbjct 1063908 GCCGGTGAGGGTTTTCACGAAGATCTGCATGG 1063877 >seq4810 Length=1195048 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || |||||||| | || ||||| || || |||||||| || Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||| ||||| ||||| || |||| ||||||||||| || || || Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | || | ||| || | | ||||||| Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | || |||||||||| ||| || || || ||||||||| || Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGCCT 316528 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||||||| | || ||||| || || |||||||||||| | Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| ||||| || |||| ||||||||||| || || || Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||||| | | ||||||| Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACC 316351 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | ||| | || |||||||||| ||| || || || || |||||| Sbjct 316350 TCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATG 316303 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || |||||||||||| || ||||| ||||| Sbjct 316968 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCCTCC 316909 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| ||||||||||| || || || |||||||||||||| Sbjct 316908 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 316849 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||||||||| | ||| | || ||| Sbjct 316848 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 316789 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || |||| ||| || || || ||||||||| || Sbjct 316788 CCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 316756 >seq4644 Length=1132839 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||||| || ||||| || || |||||||| ||| Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | |||||||||||| ||||| Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||||| || ||| Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || |||| ||||| ||||| |||||||| Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||||| || ||||| || || |||||||| ||| Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| || || ||||| || |||||| |||| | |||||||||||| ||||| Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||| | ||| ||| Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || ||||| ||||| || || || |||||||| Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||||| || ||||| || || |||||||| ||| Sbjct 752762 CCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752703 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | |||||||||||| || ||| Sbjct 752702 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGT 752643 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||||||| ||||| || || | || | |||||| | ||| || Sbjct 752642 ATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 752583 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| || || ||||| |||||||| Sbjct 752582 TCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | |||||| || | || ||||| || || |||||||| ||| Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| | |||||||||||| ||||| Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||| | ||| ||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || |||||||| || || ||||| |||||||| Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||||| || ||||| || || |||||||| || Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| | ||||||||||||||||| ||||| Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | || | |||||| | ||| || Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 751899 Query 118692 TCGACGGTCACCGTTTTGCCG-GTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || ||| || ||||| || ||||| |||||||| Sbjct 751898 TCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433803217949572