Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4678 84.2 2e-11 >seq4678 Length=1229792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| ||||| || || || | ||| ||||| || ||||| | |||||||| || ||||| Sbjct 1146677 AATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCACGTTCTCCATGGCGATCTG 1146736 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 || ||||||||||| | || |||| || ||||| || | ||| | || | | Sbjct 1146737 GAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCCTGGCTAAAGCGCTCCACCAG 1146796 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 || ||||| || || |||||| || ||||| || || || | || || || | Sbjct 1146797 ATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCAGCACATGGGAGATGAAGTG 1146856 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 ||||| ||| ||| |||||| | | ||| || || || || |||||||| Sbjct 1146857 GCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCCTTGGACAAGTCCACCTCTTC 1146916 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCT 16769 || ||||| || || || | |||| Sbjct 1146917 CACGGTCCAGAAGGAGGCCTCGGCCT 1146942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462482277822600