Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4988 109 1e-18 >seq4988 Length=2040242 Score = 109 bits (120), Expect = 1e-18 Identities = 258/381 (68%), Gaps = 18/381 (5%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC-GCTGGCCCGA 254069 |||| || |||| || || || || || |||||| ||||| ||||| |||| ||||| Sbjct 268142 TGCTGCTCTACGGACCACCGGGTACGGGAAAGACGAGCACCATTCTGGCAGCTG-CCCGA 268084 Query 254070 ACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAA 254129 | || || || | ||| | || ||| | || ||||||||||| || || || Sbjct 268083 CAGATTTTCGGTGATATGTACAAG---GACCGCATACTGGAGCTGAACGCGTCCGATGAG 268027 Query 254130 CGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCG------ATT 254183 || || | | || || ||| ||||||||||| ||||| || ||||| | | Sbjct 268026 CGTGGCATCAATGTGGTGCGCACCAAGATCAAGAACTTCTCACAGCTGTCGGCCAGCAGT 267967 Query 254184 TCGTCGTTCCAACC--CGGC--TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGA 254239 | ||| | || |||| |||||||| ||||| || | ||||||||||||||||| Sbjct 267966 GTG-CGTCCAGACGGACGGCCCTGTCCGCCCTTCAAAATCATCATCCTGGACGAGGCGGA 267908 Query 254240 CACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA-CTCCGTTG 254298 | | ||||| | ||| || || || || || || || ||||| | | | ||| | Sbjct 267907 CTCGATGACACATGCCGCCCAATCGGCTCTGCGTCGCACCATGGAAAAGGAGAGCCGCAG 267848 Query 254299 TGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTC 254358 ||||| || || || | ||||||||||| ||| ||||| | || | | || | Sbjct 267847 -CACGCGCTTCTGTTTGATTTGCAACTACGTTTCGCGCATCATTGTGCCCATCACGTCGC 267789 Query 254359 GGTGCGCCAAGTTTCGATTCA 254379 | ||| |||||||||| |||| Sbjct 267788 GCTGCTCCAAGTTTCGGTTCA 267768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073695672013888