Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_002747.1 Length=37667 Score E Sequences producing significant alignments: (Bits) Value seq4953 125 2e-24 >seq4953 Length=802672 Score = 125 bits (138), Expect = 2e-24 Identities = 207/293 (71%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 6168 ATGATTAACAACGTTGTA-TTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGATATAC 6226 |||||||| | || || ||| | || |||||||| || ||| ||| || | |||| Sbjct 673316 ATGATTAATACAGTAGTTCTTACT-GGACGCTTAACACGAGACGTTGA--TTTGCGATAC 673260 Query 6227 ACCACAGAA---CCAAGCAGTAGGCACATTTGGATTAGCTGTAAATCGTCAGTTTAAGAA 6283 ||| || || | ||||| || || ||| ||||||| | |||| || | || Sbjct 673259 ACC-CAAAATGGCGCGGCAGTTGGTACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAA 673201 Query 6284 CGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTTGGCGACAACAAGCCGA 6343 | ||||| || || |||||||||||| | || ||||||||||||||| || ||| || Sbjct 673200 TTCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAAATCAGCTGA 673141 Query 6344 AAATTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATTGGAATAACTGGACGAATTCAAAC 6403 ||| || ||||| || | | || || | | ||||||| || || ||||| || Sbjct 673140 AAACTTTGCCAACTTCGTGCATAAGGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGAC 673081 Query 6404 ACGAAACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTG 6456 ||||| || |||||| | || || ||| |||||||||||||||||| |||| Sbjct 673080 CCGAAATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAGTTG 673028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120405448873818