Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4644 134 1e-26 seq4810 129 5e-25 seq4863 127 2e-24 >seq4644 Length=1132839 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||| |||||||||||| || ||| |||| ||| Sbjct 752516 ACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752457 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 752456 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 752397 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||||||||| ||| || ||||| Sbjct 752396 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTT 752337 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 752336 CCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| |||| ||| Sbjct 751831 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 751772 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 751771 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 751712 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| | || ||||||| ||| || ||||| Sbjct 751711 ATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTCTTT 751652 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| || ||||||||||| ||||| Sbjct 751651 CCAGTCAAGGTTTTCACAAAGATCTGCAT 751623 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| |||| ||| Sbjct 752288 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCC 752229 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 752228 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 752169 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||||||||| ||| || ||||| Sbjct 752168 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTT 752109 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| ||||| ||||| Sbjct 752108 CCGGTAAGAGTCTTCACGAAGATCTGCAT 752080 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || ||| |||| ||| Sbjct 752744 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752685 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || || || | ||||||||||| Sbjct 752684 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGG 752625 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | |||| |||||| |||| || || ||||| Sbjct 752624 ATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTT 752565 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| ||||| Sbjct 752564 CCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || ||| | || ||| Sbjct 752060 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCC 752001 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| || || ||||| | |||||||||||| Sbjct 752000 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 751941 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| |||||| |||| || || ||||| Sbjct 751940 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTT 751881 Query 45308 CC-CGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||| ||||| Sbjct 751880 CCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851 >seq4810 Length=1195048 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| ||| ||| ||| |||| ||| Sbjct 316512 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 316453 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 316452 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 316393 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | ||| || |||||| Sbjct 316392 ATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTTG 316333 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || |||| |||||| || ||||||||||||||| || Sbjct 316332 CCGGTCAAAGTCTTGACGAAGATTTGCATGTTGGCT 316297 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| ||||||||| |||||||| ||| || ||| |||| ||| Sbjct 316968 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCCTCC 316909 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 316908 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 316849 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||| | ||| || |||||| Sbjct 316848 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 316789 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||| || ||||| |||||| Sbjct 316788 CCAGTCAAAGTCTTGACGAAGATCTGCATG 316759 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || |||| | || ||| Sbjct 316740 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCC 316681 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 316680 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 316621 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||| ||||| | ||| || |||||| Sbjct 316620 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 316561 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||| || ||||| |||||| Sbjct 316560 CCGGTCAAAGTCTTGACGAAGATCTGCATG 316531 >seq4863 Length=1240122 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 1064087 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1064028 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| ||||| || || || || | |||||||||||| Sbjct 1064027 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 1063968 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| | ||||||||||| ||| || |||||| Sbjct 1063967 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 1063908 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || ||||| ||||| |||||| || Sbjct 1063907 CCGGTGAGGGTTTTCACGAAGATCTGCATGGTG 1063875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395050446192961