Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003085.1 Length=49534 Score E Sequences producing significant alignments: (Bits) Value seq3236 107 6e-19 >seq3236 Length=117858 Score = 107 bits (118), Expect = 6e-19 Identities = 284/426 (67%), Gaps = 6/426 (1%) Strand=Plus/Minus Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995 || ||| ||||||||||||||||| || | ||||| | || || || || ||||| Sbjct 69227 GTCTGGGAGAAGCAGAACGGCAGCGTGTTTCACGCCGACCGCTTTCGGCGTGTTCATGAA 69168 Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055 | | ||| || ||||| | ||| || |||| || | | | || ||||| | Sbjct 69167 CTGATCGTGCAGTTCTATCCCGCGACCGCCCGCTGGCAGGACATCTACAACGAAGTGGCT 69108 Query 2056 GTCACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGCGCAGCC-GCCGCACCTCGG 2114 ||| || ||| ||| ||||||||| ||| ||| | ||| ||||||| ||| Sbjct 69107 ACCACGGACGACGCCCGGGCGCGGACGGTG-CGCCGTAAGCACCGCCCGCCGCACACCGG 69049 Query 2115 CGCCATCGGCGCCCACAAGTA-CACGTCCGAGGACGGCGGCCCCCGCCTCATGACGTCCG 2173 |||||||| || || || | | || | |||||||||| || ||| |||| Sbjct 69048 CGCCATCGCGGCATGCACCTATCGCAGCCTCG-ACGGCGGCCCGCGTCTCGCCCGCTCCG 68990 Query 2174 TGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTGGCGC 2233 ||| | | || ||| || ||| |||| || || || | ||||| ||| ||| Sbjct 68989 TGCAGCGTTTCCGCAACGTTCATGGGCGCGCCATCCACCCCACCGAAAAGCCGGTGCCGC 68930 Query 2234 TCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTCTTCG 2293 | | || | |||||||||| |||||| || | |||||||||| |||| |||| Sbjct 68929 TGCTCGACCTGCTGGTGCGCGTGAGCTGCCCGCCTGACGGCCTCGTCGGCGACTGGTTCG 68870 Query 2294 CGGGCTCCGGC-AGCACGGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGTTGC 2352 | || |||||| | ||||| | ||||||| |||||||||||| |||||||| Sbjct 68869 CCGGGTCCGGCGCGGCCGGCG-TCGCCTGCCGACTGGCCGGCCGCCGCTATGTCGGTTGC 68811 Query 2353 GACATC 2358 || ||| Sbjct 68810 GAAATC 68805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158377530560432