Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq4953 95.1 3e-15 >seq4953 Length=802672 Score = 95.1 bits (104), Expect = 3e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 9795 GAAGCAGATTTCATTAACTGTGTTATCTGGCGACAGTCTGCTGAAAATTTAGCCAACTGG 9854 ||||| || ||| | ||||||||||| |||||| | || |||||||| || ||||||| Sbjct 673184 GAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAAATCAGCTGAAAACTTTGCCAACTTC 673125 Query 9855 GCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTAACTACGAAAAC 9914 | | || ||| | | | ||| | ||||| |||||||| || || ||||| ||| Sbjct 673124 GTGCATAAGGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACCCGAAATTACGAGAAC 673065 Query 9915 CAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTG 9951 | || || ||||| || ||||| || ||||| |||| Sbjct 673064 AAGCAGGGCCAACGAGTTTATGTTACCGAAGTAGTTG 673028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137809186321656