Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4678 118 2e-21 >seq4678 Length=1229792 Score = 118 bits (130), Expect = 2e-21 Identities = 290/439 (66%), Gaps = 3/439 (1%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || || || || || ||||| || || || || |||||||||||| Sbjct 1146552 TTGCGTTTGCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGC 1146493 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | || | |||||||| | |||| |||||||||| | || || | || | Sbjct 1146492 TGAAGAAGCGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATG 1146433 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 | ||||| || | |||||||| ||||| || || | | || | || Sbjct 1146432 AGGGTCTGCACTGTGACTTTGCGG---TGCTGATGTTCCAGCATCTGGTGCAGCGACCGA 1146376 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | || | || | || || || || || || ||||| || || || |||| Sbjct 1146375 GGCGCGAGCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCA 1146316 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | ||||||| ||||| | | || |||||||| | ||||| |||||||||| Sbjct 1146315 CCGATGCCCTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTG 1146256 Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278 | |||||||| ||| || |||| || |||| | | |||| ||| || | | Sbjct 1146255 AGTTTGTGGCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGA 1146196 Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGA 102338 | || ||| |||||||| | || || || || ||||||||||| ||||| |||| Sbjct 1146195 ATCCGTTCAACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGA 1146136 Query 102339 GAGTCGCCGAGTATCAACG 102357 || | ||||||||| || Sbjct 1146135 AGGTGGGCGAGTATCAGCG 1146117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989518817029655