Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4765 302 6e-77 >seq4765 Length=3541379 Score = 302 bits (334), Expect = 6e-77 Identities = 1207/1884 (64%), Gaps = 36/1884 (2%) Strand=Plus/Minus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 |||||| | ||||| || |||| | || || || ||||| || || || ||||| || Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742 Query 64889 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 ||||| || || || || ||| |||||| || || || || ||| ||| | | Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | || || | ||| || || | |||||||| |||||||| || || || | ||||| | Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 65066 ||||||| ||| | | || | || ||||||| || || || | |||| || | Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564 Query 65067 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 | | |||| | | | ||||||| || || |||| | || ||| ||||| Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || ||||||| ||| || | ||| |||| | | | | || || | || || || Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || ||||| || || | || | || || || ||||| |||| ||||| || | || Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || |||| || || ||||| ||||| || ||||| || ||||| | | | Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324 Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 ||||||| |||| | | |||| || || || | |||| | ||| || | || Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 65423 ||||| || || || || || || || || | || Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483 || || || || ||||| || || ||||||||||| || || | || || ||||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 65484 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 65543 || ||||| ||||||| | ||| || || ||| ||| || | || | | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084 Query 65544 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 | ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| || Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024 Query 65604 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 || || |||| || || || | |||||||| || || || ||||| || || |||| Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966 Query 65662 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA--- 65718 | || | | ||| || |||||||| || |||||| | || || Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCG 3009906 Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 | ||||||||||| | || | || ||||| || || ||||| | ||| | | | Sbjct 3009905 TCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGG 3009846 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 || | | || || ||||| ||||| || ||||||||||| || | ||| || |||| Sbjct 3009845 AGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGAT 3009786 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | ||||| |||| ||||||||||| | || ||| | ||| | ||||| || | ||| | Sbjct 3009785 TGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCG 3009726 Query 65899 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTC 65956 || || || || ||| | |||| ||||||| | | | |||| | | |||| Sbjct 3009725 CCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG-----CCTTTC 3009672 Query 65957 TCT----TTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 || ||||| || ||| | || || |||||||| ||||| |||| | || Sbjct 3009671 CCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCTGCAG 3009614 Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070 || ||||| | | ||| ||||| | ||||| | | | | ||| || || ||||| Sbjct 3009613 GCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCAT 3009554 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 ||||||||| || ||||| || || ||| |||| ||| | | | || ||||| || | Sbjct 3009553 AAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCCTTGC 3009495 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | || |||||||| || || | |||| | | | ||| | ||||| || ||||| || | Sbjct 3009494 CGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGA 3009435 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 |||| | | || ||||| ||| || ||||| || | ||| | ||| || || Sbjct 3009434 TGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGA 3009375 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | |||| || ||| |||| | |||||||| || ||||| || || | || | | | Sbjct 3009374 AGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGC 3009315 Query 66310 CACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 | | ||||| || | | ||| || || || || || ||| || ||||| | Sbjct 3009314 CCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGATCAT 3009257 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || || ||| | || | | | ||||| || || ||| ||||| | || || Sbjct 3009256 GGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAG 3009197 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 || ||| || | || | || | || | || || | ||| || || ||||| Sbjct 3009196 GAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTG 3009137 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 || || | || || | | |||||| ||||| | ||| | || || || Sbjct 3009136 TGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACC 3009077 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||| ||||| | || || ||||| | ||||||||| || | || | ||||| ||| Sbjct 3009076 ATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTT 3009017 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 | | |||| ||| || || |||| || || |||||||| || || || |||||| Sbjct 3009016 TCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTC 3008957 Query 66668 TCGTTCGTAAATAATAACCGAGTT 66691 || |||||||| || |||||| Sbjct 3008956 GCGATCGTAAATTATGGACGAGTT 3008933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658130504170440