Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 302 6e-77
>seq4765
Length=3541379
Score = 302 bits (334), Expect = 6e-77
Identities = 1207/1884 (64%), Gaps = 36/1884 (2%)
Strand=Plus/Minus
Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888
|||||| | ||||| || |||| | || || || ||||| || || || ||||| ||
Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742
Query 64889 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947
||||| || || || || ||| |||||| || || || || ||| ||| | |
Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683
Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007
| || || | ||| || || | |||||||| |||||||| || || || | ||||| |
Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623
Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 65066
||||||| ||| | | || | || ||||||| || || || | |||| || |
Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564
Query 65067 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123
| | |||| | | | ||||||| || || |||| | || ||| |||||
Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504
Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183
|| ||||||| ||| || | ||| |||| | | | | || || | || || ||
Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444
Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243
|| ||||| || || | || | || || || ||||| |||| ||||| || | ||
Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384
Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303
|| || || |||| || || ||||| ||||| || ||||| || ||||| | | |
Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324
Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363
||||||| |||| | | |||| || || || | |||| | ||| || | ||
Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264
Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 65423
||||| || || || || || || || || | ||
Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204
Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483
|| || || || ||||| || || ||||||||||| || || | || || |||||
Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144
Query 65484 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 65543
|| ||||| ||||||| | ||| || || ||| ||| || | || | |
Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084
Query 65544 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603
| ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| ||
Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024
Query 65604 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661
|| || |||| || || || | |||||||| || || || ||||| || || ||||
Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966
Query 65662 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA--- 65718
| || | | ||| || |||||||| || |||||| | || ||
Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCG 3009906
Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778
| ||||||||||| | || | || ||||| || || ||||| | ||| | | |
Sbjct 3009905 TCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGG 3009846
Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838
|| | | || || ||||| ||||| || ||||||||||| || | ||| || ||||
Sbjct 3009845 AGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGAT 3009786
Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898
| ||||| |||| ||||||||||| | || ||| | ||| | ||||| || | ||| |
Sbjct 3009785 TGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCG 3009726
Query 65899 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTC 65956
|| || || || ||| | |||| ||||||| | | | |||| | | ||||
Sbjct 3009725 CCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG-----CCTTTC 3009672
Query 65957 TCT----TTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010
|| ||||| || ||| | || || |||||||| ||||| |||| | ||
Sbjct 3009671 CCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCTGCAG 3009614
Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070
|| ||||| | | ||| ||||| | ||||| | | | | ||| || || |||||
Sbjct 3009613 GCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCAT 3009554
Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129
||||||||| || ||||| || || ||| |||| ||| | | | || ||||| || |
Sbjct 3009553 AAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCCTTGC 3009495
Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189
| || |||||||| || || | |||| | | | ||| | ||||| || ||||| || |
Sbjct 3009494 CGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGA 3009435
Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249
|||| | | || ||||| ||| || ||||| || | ||| | ||| || ||
Sbjct 3009434 TGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGA 3009375
Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309
| |||| || ||| |||| | |||||||| || ||||| || || | || | | |
Sbjct 3009374 AGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGC 3009315
Query 66310 CACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367
| | ||||| || | | ||| || || || || || ||| || ||||| |
Sbjct 3009314 CCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGATCAT 3009257
Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427
|| || ||| | || | | | ||||| || || ||| ||||| | || ||
Sbjct 3009256 GGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAG 3009197
Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487
|| ||| || | || | || | || | || || | ||| || || |||||
Sbjct 3009196 GAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTG 3009137
Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547
|| || | || || | | |||||| ||||| | ||| | || || ||
Sbjct 3009136 TGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACC 3009077
Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607
||| ||||| | || || ||||| | ||||||||| || | || | ||||| |||
Sbjct 3009076 ATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTT 3009017
Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667
| | |||| ||| || || |||| || || |||||||| || || || ||||||
Sbjct 3009016 TCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTC 3008957
Query 66668 TCGTTCGTAAATAATAACCGAGTT 66691
|| |||||||| || ||||||
Sbjct 3008956 GCGATCGTAAATTATGGACGAGTT 3008933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658130504170440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |