Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4761 205 8e-48 >seq4761 Length=1439414 Score = 205 bits (226), Expect = 8e-48 Identities = 387/566 (68%), Gaps = 14/566 (2%) Strand=Plus/Plus Query 20779 AAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCC 20837 |||||||||| ||||||| || | || | ||| | ||| | | | |||| | ||| Sbjct 1350081 AAACGGCCATTTCCATCTGGATTTTTGGGTAGGGATTGTAATCGACTAT-CTCAAAGTCC 1350139 Query 20838 GCGCGCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGA 20897 | | ||||||||| | | |||||| | | ||| |||| ||||||||| Sbjct 1350140 TCAAACCGAAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGA 1350199 Query 20898 CGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCG 20957 ||||| || | | ||||||| | ||| ||||| || || || ||| || || ||| Sbjct 1350200 CGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCG 1350259 Query 20958 TCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATAC 21017 || |||| ||| || |||||||| || || |||| || || || || || |||| | Sbjct 1350260 TCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGG 1350319 Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 || || |||||||| ||||||||| || || || || || |||||||| ||| |||| Sbjct 1350320 GTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTC 1350379 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGACACAAAACG 21131 ||||||||||| ||||||| ||| || || || ||| | ||||| || | Sbjct 1350380 TGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAG 1350439 Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATG 21191 ||||| || || || |||||| | | ||| ||| ||||| ||| |||| | |||| Sbjct 1350440 TGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATG 1350499 Query 21192 CGCCGATCGTGGGGCCGCCTGTTAATTA---GATCCACCACGTAACGCAGCTGGTCCACC 21248 |||| || | | | |||| ||| || | ||| | |||||||||||| | Sbjct 1350500 CGCC---TGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATG 1350556 Query 21249 CCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGG 21308 ||||| || ||||| | ||||| | ||||| |||||||| || | ||||||| Sbjct 1350557 CCCTGGCCGCTGTAGTCGTCGTCGCAGGTGCGATACTCTGCCCCAAAGTGCCGCCACTGG 1350616 Query 21309 AACCCGTACACCGGCCCCAGATCGCC 21334 || ||||| ||||| |||| ||| || Sbjct 1350617 AAGCCGTATACCGGGCCCAAATCTCC 1350642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427749197293680