Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4810 145 8e-30 seq4765 141 9e-29 seq4863 102 8e-17 seq4644 98.7 1e-15 >seq4810 Length=1195048 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| ||||||| || ||||| || || ||||| |||||| Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || || ||| |||||||||| ||||| || || || Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||||| |||||| || Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||||||||| || || ||||| |||||||| Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| ||||||| || ||||| || || ||||| || || Sbjct 316759 GCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 316700 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || || ||| |||||||||| ||||| || || || Sbjct 316699 GAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | || |||| |||||| || Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||||||||| || || ||||| || ||||| Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 >seq4765 Length=3541379 Score = 141 bits (156), Expect = 9e-29 Identities = 688/1082 (64%), Gaps = 32/1082 (3%) Strand=Plus/Minus Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778 ||||||| || || || |||||| ||||| ||| || | || ||||| || || | Sbjct 3010796 CGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTT 3010737 Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCG 152837 | |||||| | ||| ||| | ||| | || | || ||| |||| ||| ||| || Sbjct 3010736 TAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTT-GCCATAGTTGGGCTCA 3010678 Query 152838 GCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATG 152897 |||| | | ||| ||||||||||| ||||| ||||| || || | |||||| ||||| Sbjct 3010677 GCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATT 3010618 Query 152898 TCGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTA 152957 | || || |||| | || ||||| | ||| ||||||| | | Sbjct 3010617 TTAATGGTGGATTTCAC---------AGAGATCTCCCAAACCGTCTTGTACAGATCGCGA 3010567 Query 152958 ATGTTGTCGGGAATTTCATCTATGGAAGCT--ATCGATCCTCGGTTTGCCATGATCCTTT 153015 | || | |||||| | || || | || || || || ||| | | |||||| | Sbjct 3010566 ACATTCTGGGGAATGGCCTCGAT--ATTCTGGATAGAGCCACGGCTGGAAATGATCTGGT 3010509 Query 153016 TCCGCATACTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGA 153075 || ||| | ||| | || | ||||||| | | || |||||| Sbjct 3010508 TCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGA 3010449 Query 153076 CAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAA 153135 | || || |||||||| || | || || | | | | ||| || |||| || | Sbjct 3010448 CCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGA 3010389 Query 153136 ACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCA 153195 | || |||||||| | ||| || || || | ||||| |||||| ||||| |||| Sbjct 3010388 AGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCA 3010329 Query 153196 ACGAATTACGTAATCCGTGTTT-TTG-TATGTTCATCTTCAATTGTGACCAGTCCCATAA 153253 || || | | |||||||| ||| | ||| ||||| | || ||||||||| | Sbjct 3010328 GAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC--CTTCAGCTTTGCCCAGTCCCAGAG 3010271 Query 153254 CGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC 153313 || |||| | | ||||| ||||| || | || || | ||| | ||| || Sbjct 3010270 GTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCC 3010211 Query 153314 GGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGC 153373 | | || |||||| | | | ||||||| ||||||| || || || | Sbjct 3010210 CTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCC 3010151 Query 153374 ATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGG 153433 || ||| | ||||| | ||||||| ||||| | | | || | ||||| |||| || Sbjct 3010150 ATAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGG 3010091 Query 153434 TATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATG 153493 | | || || | || |||||||| | || |||| ||||||||| ||||| ||||| Sbjct 3010090 GAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATG 3010031 Query 153494 GCGCATATTAGAtttttttGCAGCTTCAACA--GGATAGAAATTGCGGTCGATAATTTTA 153551 | |||||| ||||| | || || | || ||||| | ||| ||| ||||| || Sbjct 3010030 CCTCATATTCGATTTCCTGGC--CTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTG 3009973 Query 153552 TTTAAACTAATCACGACA-TGTT--TCACCACAGAATGCAACAGTTGAAAATCAAACG-- 153606 || | | | | | ||| | || | ||| | | || | | |||||| ||| Sbjct 3009972 TTCAGATTCTTGGCCACAGTCTTGGTGACCTC---CTTCAGCTTCTTAAAATCGTACGTC 3009916 Query 153607 -TTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCG 153665 || | | | | | |||||| || || ||||||| |||||| ||||| | ||| Sbjct 3009915 TTTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCG 3009856 Query 153666 TCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA 153725 ||||| | | | || | || ||||| | |||| ||||||||| || || ||| | Sbjct 3009855 TCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACA 3009796 Query 153726 TTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTT 153785 || |||||||| || | ||| || || |||||| | |||||||| || |||| || Sbjct 3009795 TTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTC 3009736 Query 153786 TC 153787 || Sbjct 3009735 TC 3009734 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||| || ||||||||||| || | |||| ||||| Sbjct 2921418 ACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 2921477 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 2921478 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 2921536 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | ||||| | || || ||||||| || | ||||| Sbjct 2921537 AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 2921596 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774 ||| || | || || ||||| || ||||| ||| |||| Sbjct 2921597 GCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 2921634 >seq4863 Length=1240122 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| || || Sbjct 1064087 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1064028 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||||||||| |||||||| || || ||||| || ||||| | Sbjct 1064027 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 1063968 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 1063967 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 1063908 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| || ||||| Sbjct 1063907 CCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4644 Length=1132839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || ||||| |||||| ||| |||||||| ||||| Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| ||||||||| Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | || || ||||| || ||||| Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| || ||||| || || Sbjct 752504 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 752445 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||| |||||||| ||||| || || || ||||| ||| || || Sbjct 752444 GCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 752385 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| ||||||||||| | ||| | ||||| ||||||| || Sbjct 752384 ACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTC 752325 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 752324 TTCACAAAGATCTGCAT 752308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032121687200