Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4810 145 8e-30
seq4765 141 9e-29
seq4863 102 8e-17
seq4644 98.7 1e-15
>seq4810
Length=1195048
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||||| ||| ||||||| || ||||| || || ||||| ||||||
Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| || ||||| || || ||| |||||||||| ||||| || || ||
Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| || || | | || | |||||||| |||||| ||
Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||||||||||| || || ||||| ||||||||
Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||||| ||| ||||||| || ||||| || || ||||| || ||
Sbjct 316759 GCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 316700
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || || ||||| || || ||| |||||||||| ||||| || || ||
Sbjct 316699 GAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| || || | | || | || |||| |||||| ||
Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||||||||||| || || ||||| || |||||
Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
>seq4765
Length=3541379
Score = 141 bits (156), Expect = 9e-29
Identities = 688/1082 (64%), Gaps = 32/1082 (3%)
Strand=Plus/Minus
Query 152719 CGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCT 152778
||||||| || || || |||||| ||||| ||| || | || ||||| || || |
Sbjct 3010796 CGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTT 3010737
Query 152779 TGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCG 152837
| |||||| | ||| ||| | ||| | || | || ||| |||| ||| ||| ||
Sbjct 3010736 TAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTT-GCCATAGTTGGGCTCA 3010678
Query 152838 GCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATG 152897
|||| | | ||| ||||||||||| ||||| ||||| || || | |||||| |||||
Sbjct 3010677 GCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATT 3010618
Query 152898 TCGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTA 152957
| || || |||| | || ||||| | ||| ||||||| | |
Sbjct 3010617 TTAATGGTGGATTTCAC---------AGAGATCTCCCAAACCGTCTTGTACAGATCGCGA 3010567
Query 152958 ATGTTGTCGGGAATTTCATCTATGGAAGCT--ATCGATCCTCGGTTTGCCATGATCCTTT 153015
| || | |||||| | || || | || || || || ||| | | |||||| |
Sbjct 3010566 ACATTCTGGGGAATGGCCTCGAT--ATTCTGGATAGAGCCACGGCTGGAAATGATCTGGT 3010509
Query 153016 TCCGCATACTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGA 153075
|| ||| | ||| | || | ||||||| | | || ||||||
Sbjct 3010508 TCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGA 3010449
Query 153076 CAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAA 153135
| || || |||||||| || | || || | | | | ||| || |||| || |
Sbjct 3010448 CCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGA 3010389
Query 153136 ACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCA 153195
| || |||||||| | ||| || || || | ||||| |||||| ||||| ||||
Sbjct 3010388 AGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCA 3010329
Query 153196 ACGAATTACGTAATCCGTGTTT-TTG-TATGTTCATCTTCAATTGTGACCAGTCCCATAA 153253
|| || | | |||||||| ||| | ||| ||||| | || ||||||||| |
Sbjct 3010328 GAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC--CTTCAGCTTTGCCCAGTCCCAGAG 3010271
Query 153254 CGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC 153313
|| |||| | | ||||| ||||| || | || || | ||| | ||| ||
Sbjct 3010270 GTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCC 3010211
Query 153314 GGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGC 153373
| | || |||||| | | | ||||||| ||||||| || || || |
Sbjct 3010210 CTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCC 3010151
Query 153374 ATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGG 153433
|| ||| | ||||| | ||||||| ||||| | | | || | ||||| |||| ||
Sbjct 3010150 ATAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGG 3010091
Query 153434 TATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATG 153493
| | || || | || |||||||| | || |||| ||||||||| ||||| |||||
Sbjct 3010090 GAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATG 3010031
Query 153494 GCGCATATTAGAtttttttGCAGCTTCAACA--GGATAGAAATTGCGGTCGATAATTTTA 153551
| |||||| ||||| | || || | || ||||| | ||| ||| ||||| ||
Sbjct 3010030 CCTCATATTCGATTTCCTGGC--CTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTG 3009973
Query 153552 TTTAAACTAATCACGACA-TGTT--TCACCACAGAATGCAACAGTTGAAAATCAAACG-- 153606
|| | | | | | ||| | || | ||| | | || | | |||||| |||
Sbjct 3009972 TTCAGATTCTTGGCCACAGTCTTGGTGACCTC---CTTCAGCTTCTTAAAATCGTACGTC 3009916
Query 153607 -TTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCG 153665
|| | | | | | |||||| || || ||||||| |||||| ||||| | |||
Sbjct 3009915 TTTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCG 3009856
Query 153666 TCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA 153725
||||| | | | || | || ||||| | |||| ||||||||| || || ||| |
Sbjct 3009855 TCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACA 3009796
Query 153726 TTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTT 153785
|| |||||||| || | ||| || || |||||| | |||||||| || |||| ||
Sbjct 3009795 TTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTC 3009736
Query 153786 TC 153787
||
Sbjct 3009735 TC 3009734
Score = 116 bits (128), Expect = 4e-21
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | |||||||| || ||||||||||| || | |||| |||||
Sbjct 2921418 ACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 2921477
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || |||||| |||||||||| |||||||| ||||| || ||||||||||| ||
Sbjct 2921478 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 2921536
Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | || | ||| | | ||| | ||||| | || || ||||||| || | |||||
Sbjct 2921537 AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 2921596
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774
||| || | || || ||||| || ||||| ||| ||||
Sbjct 2921597 GCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 2921634
>seq4863
Length=1240122
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || || ||||| || ||| || |||| || ||
Sbjct 1064087 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1064028
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || || ||| |||||||||| |||||||| || || ||||| || ||||| |
Sbjct 1064027 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 1063968
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | || | ||||| | ||||||||||| | ||| | ||||||
Sbjct 1063967 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 1063908
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||||| ||||| || |||||
Sbjct 1063907 CCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879
>seq4644
Length=1132839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || ||||| || |||
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| ||||| || ||||| |||||| ||| |||||||| |||||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||||| |||||||||
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||| ||||| | || || ||||| || |||||
Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| | |||| ||| || ||||| || ||
Sbjct 752504 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 752445
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| ||| |||||||| ||||| || || || ||||| ||| || ||
Sbjct 752444 GCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 752385
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| ||||||||||| | ||| | ||||| ||||||| ||
Sbjct 752384 ACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTC 752325
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 752324 TTCACAAAGATCTGCAT 752308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496032121687200
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