Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4765 340 3e-88 seq4678 150 3e-31 >seq4765 Length=3541379 Score = 340 bits (376), Expect = 3e-88 Identities = 1222/1891 (65%), Gaps = 50/1891 (3%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||| | ||||| || |||| | || || || ||||| || || || ||||| || Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742 Query 78768 CGTTTTTAGACCGAGACT-CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 ||||| || || || || ||| ||| || || || || || ||| ||| | | Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | || || | ||| || || | |||||||| |||||||| || || || | ||||| | Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 78945 ||||||| ||| | | || | || ||||||| || || || | |||| || | Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564 Query 78946 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 | | |||| | | | ||||||| || || |||| | || ||| ||||| Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || || |||| ||| || | ||| |||| | | | | || || | || || || Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || ||||| || || | || | || || || ||||| |||| || || || | ||| Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || || |||| || || ||||| |||||||| ||||| || ||||| | | | Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324 Query 79183 TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 ||||||| |||| | |||| || || || | |||| ||||| || | | Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302 || || | ||| | || || || || || || || || || || ||| Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 |||||||| || ||||| | ||| | ||||||||| || || | ||||| ||||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 79363 ATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || ||||| || |||| | ||| |||| | || || ||| || | || | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCC---GCCTCCTCGCTTTCGTAGGGGAAT 3010087 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| Sbjct 3010086 CTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTC 3010027 Query 79480 TTATTAGAAATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 |||| || |||| || || || | |||||||| || || || ||||| || || | Sbjct 3010026 ATATTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCA 3009969 Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA 79597 ||||| || | | ||| || ||||| || || |||||| || | ||| Sbjct 3009968 GATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATC-----GTACGTCTT 3009914 Query 79598 TT--------ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 || ||||||||||| | |||| || ||||| || || ||||| | ||| | Sbjct 3009913 TTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTC 3009854 Query 79650 AGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATT 79709 | | || | | ||||| ||||| || || || ||||| ||||| || | ||| Sbjct 3009853 GGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATT 3009794 Query 79710 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTC 79769 || ||||| ||||| |||| ||||||||||| | || ||| ||||| | ||||| || Sbjct 3009793 CTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTC 3009734 Query 79770 AATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATAGACTTGTATC 79828 | ||| | || || || || ||| | | ||| ||||||| | | | ||| Sbjct 3009733 CACCTGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG--- 3009678 Query 79829 TCTTTTCTCTT----TCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACAT 79882 | |||| || ||||||| ||| | || || |||||||| ||||| |||| Sbjct 3009677 -CCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACAT 3009621 Query 79883 CGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTC 79942 | | | || ||||| | || || ||||| | ||||| | | ||| ||| || | Sbjct 3009620 CCTGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGC 3009561 Query 79943 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCC 80001 | |||||||||||||| || ||||| || || ||| |||||||| | | | || |||| Sbjct 3009560 GCTTCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCC 3009502 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061 || || || || |||||||| || || | |||| | | | ||| || ||||| || ||| Sbjct 3009501 TCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCC 3009442 Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121 || || ||||| | | || || || ||| || ||||| || | ||| | ||| Sbjct 3009441 AAATAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACA 3009382 Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181 || || | |||| || ||| |||| | |||||||| || ||||| || || | || Sbjct 3009381 TTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATG 3009322 Query 80182 TAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 80239 | | || ||||||| || | | ||| || || || || || ||| || | Sbjct 3009321 GAAGTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGG 3009264 Query 80240 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGT 80299 |||| | || || ||| | || | | | ||||| || || ||| ||||| Sbjct 3009263 AGATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGG 3009204 Query 80300 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 80359 | || || || ||| || | || | || | || | || || | ||| || | Sbjct 3009203 TCAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCG 3009144 Query 80360 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 80419 | ||||| || || | || |||| | |||||| ||||| | ||| | || || | Sbjct 3009143 AGGCGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGT 3009084 Query 80420 CCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 | ||| ||||| | ||| || ||||| | ||||||||| || | || | |||| Sbjct 3009083 CTTCACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCT 3009024 Query 80480 TGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 80539 | ||| | |||| ||| || || |||| || || |||||||| || || || Sbjct 3009023 TACCGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACC 3008964 Query 80540 AAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 |||||| || |||||||| || |||||| Sbjct 3008963 CAAAGTCGCGATCGTAAATTATGGACGAGTT 3008933 >seq4678 Length=1229792 Score = 150 bits (166), Expect = 3e-31 Identities = 530/825 (64%), Gaps = 7/825 (1%) Strand=Plus/Plus Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 || || || ||||| || || || || || || || || |||| || || | ||| Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179 Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 49791 ||||| | |||||||| | || || || ||| | |||| || | || Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239 Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 | ||| || ||||| || || || ||||| ||||| ||||| || || || ||| Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 || || || || | || || || || || |||||| || || || || || Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359 Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 49971 | | | || |||||| | |||| | ||| | ||||||| || || || Sbjct 1146360 ATGATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCA 1146419 Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 |||||||||||||| || | || || || ||||| || || | || ||||| ||| Sbjct 1146420 CAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGG 1146479 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGATTCCTTCTA 50089 || ||||| || ||||| || ||||| ||||| || | | | ||||| || || || | Sbjct 1146480 CCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTG--AAGAAAATGCCCTCGA 1146537 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGTATCCACTTTT 50146 | |||||||| |||| | | ||| ||| | |||| || | ||||| Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 | ||||| || ||||| || || ||||| || || |||||||| || ||||| | Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATT 1146657 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 | | || || ||||| ||||||| | ||| ||||| |||||||| | Sbjct 1146658 CCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCA 1146717 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||| || ||||| ||||| || || || || || | |||||||| ||||| || || Sbjct 1146718 CGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCCT 1146777 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | ||| || || | | ||| || || || || || || ||| ||||| || |||| Sbjct 1146778 GGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCA 1146837 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 ||||| || || || ||||| | || || ||| || ||| ||| | Sbjct 1146838 GCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCCT 1146897 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | || || |||||||| ||||| || || ||||| |||| Sbjct 1146898 TGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGCCT 1146942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718222642251240