Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 340 3e-88
seq4678 150 3e-31
>seq4765
Length=3541379
Score = 340 bits (376), Expect = 3e-88
Identities = 1222/1891 (65%), Gaps = 50/1891 (3%)
Strand=Plus/Minus
Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767
|||||| | ||||| || |||| | || || || ||||| || || || ||||| ||
Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742
Query 78768 CGTTTTTAGACCGAGACT-CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826
||||| || || || || ||| ||| || || || || || ||| ||| | |
Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683
Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886
| || || | ||| || || | |||||||| |||||||| || || || | ||||| |
Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623
Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 78945
||||||| ||| | | || | || ||||||| || || || | |||| || |
Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564
Query 78946 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002
| | |||| | | | ||||||| || || |||| | || ||| |||||
Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504
Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062
|| || |||| ||| || | ||| |||| | | | | || || | || || ||
Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444
Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122
|| ||||| || || | || | || || || ||||| |||| || || || | |||
Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384
Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182
|| || || |||| || || ||||| |||||||| ||||| || ||||| | | |
Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324
Query 79183 TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242
||||||| |||| | |||| || || || | |||| ||||| || | |
Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264
Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302
|| || | ||| | || || || || || || || || || || |||
Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204
Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362
|||||||| || ||||| | ||| | ||||||||| || || | ||||| |||||
Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144
Query 79363 ATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|| ||||| || |||| | ||| |||| | || || ||| || | || |
Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCC---GCCTCCTCGCTTTCGTAGGGGAAT 3010087
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | ||||| || || || || | ||| ||||| ||||| || || || | ||| |||
Sbjct 3010086 CTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTC 3010027
Query 79480 TTATTAGAAATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537
|||| || |||| || || || | |||||||| || || || ||||| || || |
Sbjct 3010026 ATATTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCA 3009969
Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA 79597
||||| || | | ||| || ||||| || || |||||| || | |||
Sbjct 3009968 GATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATC-----GTACGTCTT 3009914
Query 79598 TT--------ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649
|| ||||||||||| | |||| || ||||| || || ||||| | ||| |
Sbjct 3009913 TTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTC 3009854
Query 79650 AGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATT 79709
| | || | | ||||| ||||| || || || ||||| ||||| || | |||
Sbjct 3009853 GGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATT 3009794
Query 79710 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTC 79769
|| ||||| ||||| |||| ||||||||||| | || ||| ||||| | ||||| ||
Sbjct 3009793 CTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTC 3009734
Query 79770 AATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATAGACTTGTATC 79828
| ||| | || || || || ||| | | ||| ||||||| | | | |||
Sbjct 3009733 CACCTGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG--- 3009678
Query 79829 TCTTTTCTCTT----TCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACAT 79882
| |||| || ||||||| ||| | || || |||||||| ||||| ||||
Sbjct 3009677 -CCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACAT 3009621
Query 79883 CGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTC 79942
| | | || ||||| | || || ||||| | ||||| | | ||| ||| || |
Sbjct 3009620 CCTGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGC 3009561
Query 79943 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCC 80001
| |||||||||||||| || ||||| || || ||| |||||||| | | | || ||||
Sbjct 3009560 GCTTCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCC 3009502
Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061
|| || || || |||||||| || || | |||| | | | ||| || ||||| || |||
Sbjct 3009501 TCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCC 3009442
Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121
|| || ||||| | | || || || ||| || ||||| || | ||| | |||
Sbjct 3009441 AAATAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACA 3009382
Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181
|| || | |||| || ||| |||| | |||||||| || ||||| || || | ||
Sbjct 3009381 TTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATG 3009322
Query 80182 TAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 80239
| | || ||||||| || | | ||| || || || || || ||| || |
Sbjct 3009321 GAAGTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGG 3009264
Query 80240 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGT 80299
|||| | || || ||| | || | | | ||||| || || ||| |||||
Sbjct 3009263 AGATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGG 3009204
Query 80300 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 80359
| || || || ||| || | || | || | || | || || | ||| || |
Sbjct 3009203 TCAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCG 3009144
Query 80360 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 80419
| ||||| || || | || |||| | |||||| ||||| | ||| | || || |
Sbjct 3009143 AGGCGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGT 3009084
Query 80420 CCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479
| ||| ||||| | ||| || ||||| | ||||||||| || | || | ||||
Sbjct 3009083 CTTCACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCT 3009024
Query 80480 TGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 80539
| ||| | |||| ||| || || |||| || || |||||||| || || ||
Sbjct 3009023 TACCGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACC 3008964
Query 80540 AAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570
|||||| || |||||||| || ||||||
Sbjct 3008963 CAAAGTCGCGATCGTAAATTATGGACGAGTT 3008933
>seq4678
Length=1229792
Score = 150 bits (166), Expect = 3e-31
Identities = 530/825 (64%), Gaps = 7/825 (1%)
Strand=Plus/Plus
Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731
|| || || ||||| || || || || || || || || |||| || || | |||
Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179
Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 49791
||||| | |||||||| | || || || ||| | |||| || | ||
Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239
Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851
| ||| || ||||| || || || ||||| ||||| ||||| || || || |||
Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299
Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911
|| || || || | || || || || || |||||| || || || || ||
Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359
Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 49971
| | | || |||||| | |||| | ||| | ||||||| || || ||
Sbjct 1146360 ATGATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCA 1146419
Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031
|||||||||||||| || | || || || ||||| || || | || ||||| |||
Sbjct 1146420 CAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGG 1146479
Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGATTCCTTCTA 50089
|| ||||| || ||||| || ||||| ||||| || | | | ||||| || || || |
Sbjct 1146480 CCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTG--AAGAAAATGCCCTCGA 1146537
Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGTATCCACTTTT 50146
| |||||||| |||| | | ||| ||| | |||| || | |||||
Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597
Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206
| ||||| || ||||| || || ||||| || || |||||||| || ||||| |
Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATATT 1146657
Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266
| | || || ||||| ||||||| | ||| ||||| |||||||| |
Sbjct 1146658 CCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCA 1146717
Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326
||| || ||||| ||||| || || || || || | |||||||| ||||| || ||
Sbjct 1146718 CGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTCCT 1146777
Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386
| ||| || || | | ||| || || || || || || ||| ||||| || ||||
Sbjct 1146778 GGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCA 1146837
Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446
||||| || || || ||||| | || || ||| || ||| ||| |
Sbjct 1146838 GCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATCCT 1146897
Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
| || | || || |||||||| ||||| || || ||||| ||||
Sbjct 1146898 TGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGCCT 1146942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718222642251240
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