Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4810 102 6e-17 seq4644 93.3 3e-14 seq4863 82.4 6e-11 >seq4810 Length=1195048 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | ||||| || | ||| |||||| || | ||||||||||| Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| |||| || || |||||||| |||| ||||| || || | || Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | ||||||| | |||||| Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||| | ||| || || || |||||||| || Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTT 316301 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| |||||||| | | |||||||| | |||| |||||| || | |||||||||| Sbjct 316988 CGCCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGG 316929 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| || ||| |||| |||| || || |||||||| |||| ||||| || || | | Sbjct 316928 ACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316869 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| | | | |||||| | ||||| Sbjct 316868 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGA 316809 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || | ||| || || || || ||||| Sbjct 316808 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 >seq4644 Length=1132839 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| | | |||||| |||| ||| |||||| || | ||||| ||||| Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| || |||||||| || ||||| ||||| ||||| | || Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| || || || Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTT 43111 || | || || || ||||| || | ||||||||||| || ||||||| Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621 >seq4863 Length=1240122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | |||||| || | || |||||| || | ||||| ||||| Sbjct 1064106 GCCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1064047 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| || ||||||||||| |||| ||||| ||||| | || Sbjct 1064046 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGG 1063987 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | ||||| || ||| || Sbjct 1063986 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCAC 1063927 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || |||||||| || || ||||| Sbjct 1063926 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381345704930178