Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4765 295 9e-75 >seq4765 Length=3541379 Score = 295 bits (326), Expect = 9e-75 Identities = 1200/1877 (64%), Gaps = 40/1877 (2%) Strand=Plus/Minus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||| | || ||||| |||| | || || | ||||| || || || ||||| || Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742 Query 70851 TGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 ||||| || || || || ||| |||||| || || || || ||| |||| | | Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | || || | ||||| || | ||| ||||| |||||||| || || || | ||||| | Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 71028 ||||||| ||| | | || | || ||||||| || || || | |||| || | Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564 Query 71029 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 | | |||| | | | ||||||| || || |||| | ||| ||| || || Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || || |||| ||| || | ||| |||| | | | | || ||| | || || || Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || ||||| || || | || | || || || ||||| |||| ||||| || | || Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 || || || |||| || || ||||| ||||| || ||||| || ||||| | ||| Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324 Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGAT 71325 ||||||| || ||| ||| || || || | |||| | ||| || | || Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 71326 GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATAT 71385 ||||| || || || || || || | || Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 71386 GTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAA 71445 || || || || ||||| | ||| ||||||||||| || || | ||||||||||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 71446 ATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || ||||| || |||| | ||| |||| | || ||| ||| || | || | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCC---GCCTCCTCGCTTTCGTAGGGGAAT 3010087 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | ||||| || || || || | ||| ||||||||||| || || || | || ||| Sbjct 3010086 CTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTC 3010027 Query 71563 TTATTAGAAATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 |||| || |||| || || || | |||||||| || || || ||||| || || | Sbjct 3010026 ATATTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCA 3009969 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA 71680 |||| || | | ||| || ||||| || || |||||| | || || Sbjct 3009968 GATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGG 3009909 Query 71681 ---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | ||||||| ||| | || | || ||||| || || ||||| | ||| | | Sbjct 3009908 GCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCG 3009849 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 || || | | ||||| ||||| ||||| || ||||||||||| || | ||| || | Sbjct 3009848 AGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCT 3009789 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 |||| ||||| |||| ||||||||||| | || || ||||| | ||||| || | || Sbjct 3009788 GATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCT 3009729 Query 71858 GAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 | | || || || || ||| | | ||| ||||||| | | | ||| | || Sbjct 3009728 GCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG----CCTT 3009674 Query 71917 TCTCTT----TCGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT 71970 || || ||||||| ||| | || || |||||||| ||||| ||| | Sbjct 3009673 TCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCTGC 3009616 Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 | || ||||| | | ||| ||||| | ||||| | | ||| | | || || ||| Sbjct 3009615 AGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTC 3009556 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||||||||||| || ||||| || || ||| |||||||| | | | || |||||| || Sbjct 3009555 ATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCCTT 3009497 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || || |||||||| || || | |||| | | | ||| || ||||| || ||||| || Sbjct 3009496 GCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATA 3009437 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | | || ||||| ||| || ||||| || | ||| | ||| || || Sbjct 3009436 GATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTT 3009377 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 | |||| || ||| |||| | |||||||| | ||||| || || | || | | Sbjct 3009376 GAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGT 3009317 Query 72270 TCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 72327 || ||||||| || | || ||| || || || || || ||| || ||||| Sbjct 3009316 GCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGATC 3009259 Query 72328 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 72387 | || || ||| | || | | | ||||| || || ||| ||||| | || Sbjct 3009258 ATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGG 3009199 Query 72388 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 || || ||| || | || | || | || | || || | ||| || || ||| Sbjct 3009198 AGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCG 3009139 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 72507 || || || | || |||| | |||||| ||||| | ||| | || || || Sbjct 3009138 TGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCA 3009079 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 ||| ||||| | ||| || ||||| | ||| ||||| || | || | ||||| Sbjct 3009078 CCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCG 3009019 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 ||| | |||| ||| || || |||| || || |||||||| || || || |||| Sbjct 3009018 TTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAG 3008959 Query 72628 TCTCGTTCGTAAATAAT 72644 || || |||||||| || Sbjct 3008958 TCGCGATCGTAAATTAT 3008942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671096070917160