Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4765 161 1e-34 seq4810 114 1e-20 >seq4765 Length=3541379 Score = 161 bits (178), Expect = 1e-34 Identities = 694/1081 (64%), Gaps = 32/1081 (3%) Strand=Plus/Minus Query 156142 GACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTT 156201 |||||| || || | |||||| ||||| ||||| | || ||||| |||||||| Sbjct 3010795 GACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTT 3010736 Query 156202 GAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-G 156260 ||||| |||||| ||| | ||| | || | || || | || ||| ||| | | Sbjct 3010735 AAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTT-GCCATAGTTGGGCTCAG 3010677 Query 156261 CCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTT 156320 ||| | | ||||||||||||||| ||||||||||| || || | ||||| ||||||| Sbjct 3010676 CCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTT 3010617 Query 156321 CAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTA 156380 ||| | |||| || | ||||||||| || ||| ||||||| | | Sbjct 3010616 TAATGGTGGATTTCACAGAGATCTCCCAAA---CC------GTCTTGTACAGATCGCGAA 3010566 Query 156381 GATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGAT-TGTTTTT 156439 ||| | |||||| ||||| || || || | | | | ||||| || || | Sbjct 3010565 CATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCT 3010506 Query 156440 CGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACA 156499 ||| || | | | | | ||||||| | | || ||||||| Sbjct 3010505 -TCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACC 3010447 Query 156500 ACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAAT 156559 || || |||||||| || | ||| || | | | | ||| || |||| || || Sbjct 3010446 ACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAG 3010387 Query 156560 GACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAAT 156619 || ||||||||| | ||| || || || | ||||| |||||| ||||| |||| Sbjct 3010386 GATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGA 3010327 Query 156620 GAATTACGTAATCCGTATTT-TTGTATATTTATT--TTCAACTGTGACCAGTCCCATAAC 156676 || || | | |||| ||| ||| || ||| |||| || || ||||||||| | Sbjct 3010326 GAGTTTCTAACGCCGTGTTTCTTG---ATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGG 3010270 Query 156677 GAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCG 156736 || |||||| | | ||||| ||||| || | ||||| | |||| | ||| || Sbjct 3010269 TTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCC 3010210 Query 156737 GCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGCGCAGCA 156796 | | || ||| || | || |||||||| ||||||| || || || || Sbjct 3010209 TCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCA 3010150 Query 156797 TGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGT 156856 | ||| | |||||| || |||| ||||| ||| | || | ||||| |||| || Sbjct 3010149 TAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG 3010090 Query 156857 ATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGG 156916 | | || || || || |||||||| | || |||| ||||||||| ||||| ||||| Sbjct 3010089 AATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGC 3010030 Query 156917 CGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAATAATTTTAT 156974 | |||||| ||||| | || | | |||| || | ||| |||||||| || | Sbjct 3010029 CTCATATTCGATTTCCTGGC--CTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972 Query 156975 TCAAACTATCCACTACA-TGTT--TGACCACAGTGTGCAATAGTTGAAAATCAAAAG--- 157028 ||| | | | | ||| | || ||||| | | || | || |||||| | | Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGC--TTCTT-AAAATCGTACGTCT 3009915 Query 157029 TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGT 157088 | || | | | | | |||| || || ||||| || || || ||||| | |||| Sbjct 3009914 TTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGT 3009855 Query 157089 CGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAAT 157148 |||||| | | || | || ||||| | |||| ||||||||| || || || || Sbjct 3009854 CGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACAT 3009795 Query 157149 TACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTT 157208 | |||||||| || | |||||| || |||||| | | ||||||||| |||| || | Sbjct 3009794 TCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCT 3009735 Query 157209 C 157209 | Sbjct 3009734 C 3009734 Score = 105 bits (116), Expect = 7e-18 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 2921472 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2921531 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | ||||||| ||||| || |||| ||| | Sbjct 2921532 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 2921591 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 143194 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 2921592 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 2921634 >seq4810 Length=1195048 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||| ||| || |||| || || || || || |||||||||||| Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| || || || || || ||| |||||||||| ||||| || || || Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| | ||| || || Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| || || ||||| |||||||| Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || ||||| | || || || || || |||||||||||| Sbjct 316987 GCCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGA 316928 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| || || || || || ||| |||||||||| ||||| || || || Sbjct 316927 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316868 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| | ||| || || Sbjct 316867 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGAC 316808 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 316807 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||| ||| || |||| || || || || || |||||||| || Sbjct 316759 GCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 316700 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || || || || || || ||| |||||||||| ||||| || || || Sbjct 316699 GAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | || || | ||| || || Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||| || || ||||| || ||||| Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506981817987120