Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 161 1e-34
seq4810 114 1e-20
>seq4765
Length=3541379
Score = 161 bits (178), Expect = 1e-34
Identities = 694/1081 (64%), Gaps = 32/1081 (3%)
Strand=Plus/Minus
Query 156142 GACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTT 156201
|||||| || || | |||||| ||||| ||||| | || ||||| ||||||||
Sbjct 3010795 GACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTT 3010736
Query 156202 GAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-G 156260
||||| |||||| ||| | ||| | || | || || | || ||| ||| | |
Sbjct 3010735 AAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTT-GCCATAGTTGGGCTCAG 3010677
Query 156261 CCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTT 156320
||| | | ||||||||||||||| ||||||||||| || || | ||||| |||||||
Sbjct 3010676 CCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTT 3010617
Query 156321 CAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTA 156380
||| | |||| || | ||||||||| || ||| ||||||| | |
Sbjct 3010616 TAATGGTGGATTTCACAGAGATCTCCCAAA---CC------GTCTTGTACAGATCGCGAA 3010566
Query 156381 GATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGAT-TGTTTTT 156439
||| | |||||| ||||| || || || | | | | ||||| || || |
Sbjct 3010565 CATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCT 3010506
Query 156440 CGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACA 156499
||| || | | | | | ||||||| | | || |||||||
Sbjct 3010505 -TCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACC 3010447
Query 156500 ACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAAT 156559
|| || |||||||| || | ||| || | | | | ||| || |||| || ||
Sbjct 3010446 ACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAG 3010387
Query 156560 GACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAAT 156619
|| ||||||||| | ||| || || || | ||||| |||||| ||||| ||||
Sbjct 3010386 GATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGA 3010327
Query 156620 GAATTACGTAATCCGTATTT-TTGTATATTTATT--TTCAACTGTGACCAGTCCCATAAC 156676
|| || | | |||| ||| ||| || ||| |||| || || ||||||||| |
Sbjct 3010326 GAGTTTCTAACGCCGTGTTTCTTG---ATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGG 3010270
Query 156677 GAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCG 156736
|| |||||| | | ||||| ||||| || | ||||| | |||| | ||| ||
Sbjct 3010269 TTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCC 3010210
Query 156737 GCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGCGCAGCA 156796
| | || ||| || | || |||||||| ||||||| || || || ||
Sbjct 3010209 TCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCA 3010150
Query 156797 TGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGT 156856
| ||| | |||||| || |||| ||||| ||| | || | ||||| |||| ||
Sbjct 3010149 TAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG 3010090
Query 156857 ATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGG 156916
| | || || || || |||||||| | || |||| ||||||||| ||||| |||||
Sbjct 3010089 AATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGC 3010030
Query 156917 CGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAATAATTTTAT 156974
| |||||| ||||| | || | | |||| || | ||| |||||||| || |
Sbjct 3010029 CTCATATTCGATTTCCTGGC--CTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972
Query 156975 TCAAACTATCCACTACA-TGTT--TGACCACAGTGTGCAATAGTTGAAAATCAAAAG--- 157028
||| | | | | ||| | || ||||| | | || | || |||||| | |
Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGC--TTCTT-AAAATCGTACGTCT 3009915
Query 157029 TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGT 157088
| || | | | | | |||| || || ||||| || || || ||||| | ||||
Sbjct 3009914 TTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGT 3009855
Query 157089 CGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAAT 157148
|||||| | | || | || ||||| | |||| ||||||||| || || || ||
Sbjct 3009854 CGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACAT 3009795
Query 157149 TACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTT 157208
| |||||||| || | |||||| || |||||| | | ||||||||| |||| || |
Sbjct 3009794 TCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCT 3009735
Query 157209 C 157209
|
Sbjct 3009734 C 3009734
Score = 105 bits (116), Expect = 7e-18
Identities = 123/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
||||| || || || |||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct 2921472 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2921531
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||| || ||| | | ||| | ||||||| ||||| || |||| ||| |
Sbjct 2921532 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 2921591
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 143194
|||||||| || | || || ||||| || ||||| ||| ||||
Sbjct 2921592 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 2921634
>seq4810
Length=1195048
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||||| ||| || |||| || || || || || ||||||||||||
Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| || || || || || ||| |||||||||| ||||| || || ||
Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||| || ||||| || || || | | || | ||||| | ||| || ||
Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||||||||||| || || ||||| ||||||||
Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||||| || ||||| | || || || || || ||||||||||||
Sbjct 316987 GCCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGA 316928
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| || || || || || ||| |||||||||| ||||| || || ||
Sbjct 316927 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316868
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||| || ||||| || || || | | || | ||||| | ||| || ||
Sbjct 316867 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGAC 316808
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||||| ||||| || || ||||| || |||||
Sbjct 316807 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||||| ||| || |||| || || || || || |||||||| ||
Sbjct 316759 GCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 316700
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| || || || || || || ||| |||||||||| ||||| || || ||
Sbjct 316699 GAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||| || ||||| || || || | | || | || || | ||| || ||
Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||||||||||| || || ||||| || |||||
Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506981817987120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |