Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 260 2e-64
seq5015 208 1e-48
seq4765 206 4e-48
seq4761 147 3e-30
>seq4678
Length=1229792
Score = 260 bits (288), Expect = 2e-64
Identities = 568/840 (68%), Gaps = 28/840 (3%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| |||||||||| ||||| || |||||||| || |||||||||| || ||| |
Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCGACT 1146883
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|| | ||| | | || || || | || || || || | ||||||||||||
Sbjct 1146882 GGCA---TCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTTG 1146826
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
||| ||||||||| || |||||||| |||||| || || || || ||| | |
Sbjct 1146825 CCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCCAGGAGGTACAGA 1146766
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| | |||| |||||||| || ||||| ||| || ||||||||||| ||||| |
Sbjct 1146765 TCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGA 1146706
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC-GTAAACACATGCTCTTT 125336
||||| | ||||| |||| |||||||| || || || | | | || || ||
Sbjct 1146705 TGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGGGAATAT-CTGTTC 1146647
Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392
|| || || || || ||||| | || || |||||| | |||| | ||
Sbjct 1146646 AATGCCATTGAGACCATGCCGGCG----GTGAAGCGCAAGGCTGACTGGGCCCTGTCCTG 1146591
Query 125393 GATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449
|||| | | ||||| | || | || | | | || || |||||||| ||
Sbjct 1146590 GATCTCTTCC---AAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGA 1146534
Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
|||||| ||||| || || ||||| |||| || ||||| ||||||||||| || ||
Sbjct 1146533 GGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGAT 1146474
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
||| || |||| | || ||| | || || || || ||||| || |||||||||||
Sbjct 1146473 GCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGTGACTT 1146414
Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629
||| | || |||| | | ||||| || | | | | || | |||| | |
Sbjct 1146413 TGCGGTGCTGATGTTCC---AGCATCTG-GTGCAGCGACC-GAGGC-GCGAGCGCA---T 1146363
Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689
|||| | || | ||| || ||| || || || ||||| || ||||| |||| ||
Sbjct 1146362 CATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCC 1146303
Query 125690 GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749
||| | |||| ||||||||||| | || |||| ||||||| ||||||||||| ||
Sbjct 1146302 GGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTGGCCGA 1146243
Query 125750 TCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTT 125809
|||||| ||| |||| || | | ||||| |||||| |||||||||| || | ||
Sbjct 1146242 TCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTCAACTT 1146183
Query 125810 CATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
|||| | || || || || || ||||||||||| || ||||||||||| |||||||
Sbjct 1146182 CATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTA 1146123
>seq5015
Length=513922
Score = 208 bits (230), Expect = 1e-48
Identities = 387/569 (68%), Gaps = 12/569 (2%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | ||||| || |||| || ||||| | || ||||||||||| || ||||||
Sbjct 445783 TTGCGGAAGAAGATCACACCGGAACGTGGACCGCGCAGGGTCTTGTGCGTGGTGGTGGTC 445842
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| ||||||||| || ||||| | | | || | | ||| || |
Sbjct 445843 ACAATGTCGGCATACTCAAACGGCGAGGGAATCAAGCCGGCGGCCACAATGCCAGCCACA 445902
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || || ||||||||||| ||| ||| | | ||| ||||| ||||| || |
Sbjct 445903 TGGGCCATGTCGGCCATCAGATAGGCACCGACATCGTCGCAAATCTTACGGAAACGGGCA 445962
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
|| |||| | || | |||||| | ||||||| ||||| | | || |||
Sbjct 445963 TAATCCAGCAGGCGGGAATAGCACGAGATGCCGGCAATGATGATCTGCGGACGGAAATTC 446022
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
||||| |||||| || ||| | || |||| || || |||| || | ||||||||||
Sbjct 446023 TTGGCTGCCTCGGCCAGCTTGTCGTAATCGATGATGCCCGTCTCGGGGTTCACCTTGTAC 446082
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449
|||||||| ||||| |||| ||||| ||||| | || ||| ||| ||
Sbjct 446083 GGCATGCTCTCGAAGAAGATCGATGTTGCGGAGATCTTCTTGGTGGGCGTGAAGAAGCCA 446142
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|| || || ||||| || ||||| ||||| || |||||||| | | || ||
Sbjct 446143 TGGGTTAGATGGCCACCATCGGGTAGATCCAGACCCATGATGCGGTCATGTGGCCGGCAC 446202
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| || || || ||||| || |||||| ||| ||||| || || || ||| || |||
Sbjct 446203 ACGCCCGTATAGACGGCCAAATTGGCCGGCGACCCCGAATATGGCTGGACATTGACGCCC 446262
Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629
|| | | || | | |||||| | ||| | || | ||| || ||||| ||||||
Sbjct 446263 CACTGATCCCCGCTGAGGTTGAACAGTTCGAGGCCGCGTTTCTGGGCCAGCAGCTCGATG 446322
Query 127630 CGATCGATAAACTCGTTACCACCATAGTA 127658
| |||||||||||||| || ||||||||
Sbjct 446323 CAGTCGATAAACTCGTTGCCGCCATAGTA 446351
>seq4765
Length=3541379
Score = 206 bits (228), Expect = 4e-48
Identities = 955/1489 (64%), Gaps = 56/1489 (4%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864
||||| |||| | ||| |||||| || || ||||| || | | ||| |||||| | |
Sbjct 3009332 ACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAA--CAATGTGGCTC 3009389
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
| ||||| ||||| ||| || ||||| || || | ||| |||| ||||| || |
Sbjct 3009390 GGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGCCCT 3009449
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||| |||| || || || || | || || || ||| | ||| || ||| |
Sbjct 3009450 GGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGAATC 3009509
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| || | || | || ||||| |||||| | || ||| | || |||||||||||| | |
Sbjct 3009510 GTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCGAGG 3009569
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
|| ||||| |||||||||||| || || ||||| ||| ||| ||||
Sbjct 3009570 CGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGTGGG 3009629
Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-----CCGATACGTGAG 97159
|||| ||||||||| |||| |||||| ||||| || || || |
Sbjct 3009630 GCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAAT-CG---G 3009685
Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219
|| ||| | || | |||||| |||||| | ||| ||||| |||||||| |
Sbjct 3009686 AC-AGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAA 3009744
Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCA 97278
||||||||| |||| ||||||| | ||| | | | || ||||| || | | ||||||
Sbjct 3009745 TCCGTACATGCTCTTCAAGGATGC-GTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCA 3009803
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
|||||||| || |||||||||||| ||||| || |||||| |||| || ||||||| |
Sbjct 3009804 CCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCG 3009863
Query 97339 CAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG---GTAAAG-TGTTT 97394
| || ||| ||||| || || ||| || |||||| || | | |||| ||
Sbjct 3009864 CCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGT-GACGCCCGAAAAGACGTAC 3009922
Query 97395 AATCTCAACCTATTGGCAAAGACGGTGC---GTCTGGTGACTAGGAATCTAAACAAGATT 97451
|| | || || || || | | | || ||| | | |||||| |||||||||
Sbjct 3009923 GATTTTAAGAAGCTG--AAGGAGGTCACCAAGACT-GTGGCCAAGAATCTGAACAAGATT 3009979
Query 97452 ATCGACAATGCACT-CTATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACC 97510
|| ||| || ||| |||||| | || ||| || || || | | ||| || ||
Sbjct 3009980 ATTGAC-ATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCATCGCCC 3010038
Query 97511 CATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTA--- 97567
||| || || || || || || ||| || || || ||||| | | ||||
Sbjct 3010039 CATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGA 3010098
Query 97568 ---CGAGGACTCGATGCAGTTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACT 97624
|||||| || | |||||| | || || ||||| || || ||| ||| ||
Sbjct 3010099 AAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGAGCCCT 3010158
Query 97625 GACGGAGAGTTGCCAACTGGCCAGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCC 97684
| | ||||| |||||||| || | || || ||| | ||| | || |||||
Sbjct 3010159 GGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAGCCC 3010218
Query 97685 GACCAGTCGTGGAGAGTTGCACTTCGAC---CGATACTCGGTGCACAGCCAAAAGTGTGA 97741
|| ||| | || | |||| | || ||| | || | || ||
Sbjct 3010219 CGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTCTGGGA 3010278
Query 97742 CTGGTCATCGTTGCGCAAAGACATTGCTC----GGTACGGTTTGAGAAACTCTTTGCTGG 97797
|||| || | || ||| || | || |||| | ||||||||| |||| |
Sbjct 3010279 CTGGGCAAAGCTG----AAGGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTCG 3010334
Query 97798 TGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAAC 97857
|||| || ||||||||||| ||||| |||| | | ||||| ||||| || || |
Sbjct 3010335 TGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAGC 3010394
Query 97858 CGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACG 97917
||| ||| | || || || | ||| | || || || || || || ||||
Sbjct 3010395 CGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCGAATTCCAGGTGGTCAACC 3010454
Query 97918 TGCACTTGGTTCGAGACTTGGAAC--GGCTCAATCTGTGGAACGATGACATGGCCCAGTT 97975
||| | | || || | ||| ||| | ||||| | ||||||||| |
Sbjct 3010455 ATCACCTATTGCGGGA--TCTAACTGAGCTGGACTTGTGGGATGATGACATGAAGAACCA 3010512
Query 97976 GATCATGTACAACAATGGGTCCATTCAAAACATTACCATCAT--CCCGGAAGAGTTGCGC 98033
|||||| | || | ||| || || || || || ||| ||| ||| ||| |||
Sbjct 3010513 GATCATTTCCAGCCGTGGCTCTATCCAGAATATCGAGGCCATTCCCCAGAA-TGTT-CGC 3010570
Query 98034 AGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGA 98092
| |||||||| || |||||||| || | || | | || | ||||| || ||
Sbjct 3010571 GATCTGTACAAGACGGTTTGGGAGATCTCTGTGAAATCCAC-CATTAAAATGGCCGCAGA 3010629
Query 98093 CAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA 98152
| |||| | || || ||||||||||||||||| | | || || ||||||| |||
Sbjct 3010630 TCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAACATTCATGTGGCTGAGCCCAACTA 3010689
Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212
| |||| || |||||||||||| | ||||| ||||| || || || |||||
Sbjct 3010690 TGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGCTGGCCTTAAAACCGGGATGTA 3010749
Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261
|| || | || ||| |||| |||||||||||| || || || |||
Sbjct 3010750 TTACCTCCGCACGAAGCCGGCTGCCAATGCCATACAGTTCACCGTCGAC 3010798
>seq4761
Length=1439414
Score = 147 bits (162), Expect = 3e-30
Identities = 379/569 (67%), Gaps = 14/569 (2%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| ||| |||| || || ||||| ||||||||| |||||| || | ||||| |
Sbjct 1350642 GGAGATTTGGGCCCGGTATACGGCTTCCAGTGGCGGCACTTTGGGGCAGAGTATCGCACC 1350583
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184
||||| ||| ||||| || ||||| | || || ||| | || | || || ||
Sbjct 1350582 TGCGACGAC-GACTACAGCGGCCAGGGCATCGACCAGCTGC-GTCAGGTGATCGAGACGA 1350525
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
| |||| |||||| | || ||| | ||| | |||| | |||||||||| ||| |
Sbjct 1350524 TAAAGAACAATCCGTCGGACAGGCGCATCATCATGTCCGCATGGAATCCCCTGGATAT-- 1350467
Query 70245 ACCAAA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTACGA--- 70296
|||||| |||| || || || |||||||| |||| ||||| | | || | ||
Sbjct 1350466 ACCAAAGATGGCGCTGCCGCCATGTCACTGCCTGGCGCAGTTCTTCGTATCCCAGGACCG 1350407
Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356
|||| | ||||| || |||| |||||||| || |||||||| || || || || ||
Sbjct 1350406 TGGCGAGTTGTCCTGTCAGCTGTACCAGAGGAGCGCTGACATGGGTCTGGGCGTGCCATT 1350347
Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416
||||| || || | || | || |||||||| || || | || || ||||| |
Sbjct 1350346 CAACATCGCCTCTTACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCC 1350287
Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476
|| || || || ||||| ||||||||||| || || ||||||| | || || |
Sbjct 1350286 TGGTGACTTTGTTCATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCT 1350227
Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGT 70536
|||| ||| || | || ||| | || ||||||||||||| | | || || ||
Sbjct 1350226 GAAGGAGCAGCTGCAGCGCACTCCGCGTCCGTTTCCCAAGCTGGTGATCAAGCGCAAGGT 1350167
Query 70537 TGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCC 70596
| | ||||| ||| || || || ||| ||| | |||| |||| |||||
Sbjct 1350166 GCAGGACATTGAGGACTTTCGGTTTGAGGACTTTGAGATAGTCGATTACAATCCCTACCC 1350107
Query 70597 TAAGATTCCCATGGTTCTGGCTGTTTAGA 70625
|| || | |||| |||| |||||||
Sbjct 1350106 AAAAATCCAGATGGAAATGGCCGTTTAGA 1350078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741011577683160
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