Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4678 260 2e-64 seq5015 208 1e-48 seq4765 206 4e-48 seq4761 147 3e-30 >seq4678 Length=1229792 Score = 260 bits (288), Expect = 2e-64 Identities = 568/840 (68%), Gaps = 28/840 (3%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||||||||| ||||| || |||||||| || |||||||||| || ||| | Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCGACT 1146883 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| | | || || || | || || || || | |||||||||||| Sbjct 1146882 GGCA---TCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTTG 1146826 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||||||||| || |||||||| |||||| || || || || ||| | | Sbjct 1146825 CCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCCAGGAGGTACAGA 1146766 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| |||||||| || ||||| ||| || ||||||||||| ||||| | Sbjct 1146765 TCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGA 1146706 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC-GTAAACACATGCTCTTT 125336 ||||| | ||||| |||| |||||||| || || || | | | || || || Sbjct 1146705 TGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGGGAATAT-CTGTTC 1146647 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 || || || || || ||||| | || || |||||| | |||| | || Sbjct 1146646 AATGCCATTGAGACCATGCCGGCG----GTGAAGCGCAAGGCTGACTGGGCCCTGTCCTG 1146591 Query 125393 GATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||| | | ||||| | || | || | | | || || |||||||| || Sbjct 1146590 GATCTCTTCC---AAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGA 1146534 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||| ||||| || || ||||| |||| || ||||| ||||||||||| || || Sbjct 1146533 GGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGAT 1146474 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || |||| | || ||| | || || || || ||||| || ||||||||||| Sbjct 1146473 GCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCACTGTGACTT 1146414 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629 ||| | || |||| | | ||||| || | | | | || | |||| | | Sbjct 1146413 TGCGGTGCTGATGTTCC---AGCATCTG-GTGCAGCGACC-GAGGC-GCGAGCGCA---T 1146363 Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689 |||| | || | ||| || ||| || || || ||||| || ||||| |||| || Sbjct 1146362 CATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCC 1146303 Query 125690 GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 ||| | |||| ||||||||||| | || |||| ||||||| ||||||||||| || Sbjct 1146302 GGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTGGCCGA 1146243 Query 125750 TCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTT 125809 |||||| ||| |||| || | | ||||| |||||| |||||||||| || | || Sbjct 1146242 TCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTCAACTT 1146183 Query 125810 CATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 |||| | || || || || || ||||||||||| || ||||||||||| ||||||| Sbjct 1146182 CATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTA 1146123 >seq5015 Length=513922 Score = 208 bits (230), Expect = 1e-48 Identities = 387/569 (68%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || |||| || ||||| | || ||||||||||| || |||||| Sbjct 445783 TTGCGGAAGAAGATCACACCGGAACGTGGACCGCGCAGGGTCTTGTGCGTGGTGGTGGTC 445842 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| ||||||||| || ||||| | | | || | | ||| || | Sbjct 445843 ACAATGTCGGCATACTCAAACGGCGAGGGAATCAAGCCGGCGGCCACAATGCCAGCCACA 445902 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | | ||| ||||| ||||| || | Sbjct 445903 TGGGCCATGTCGGCCATCAGATAGGCACCGACATCGTCGCAAATCTTACGGAAACGGGCA 445962 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || |||| | || | |||||| | ||||||| ||||| | | || ||| Sbjct 445963 TAATCCAGCAGGCGGGAATAGCACGAGATGCCGGCAATGATGATCTGCGGACGGAAATTC 446022 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| |||||| || ||| | || |||| || || |||| || | |||||||||| Sbjct 446023 TTGGCTGCCTCGGCCAGCTTGTCGTAATCGATGATGCCCGTCTCGGGGTTCACCTTGTAC 446082 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| ||||| ||||| | || ||| ||| || Sbjct 446083 GGCATGCTCTCGAAGAAGATCGATGTTGCGGAGATCTTCTTGGTGGGCGTGAAGAAGCCA 446142 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || || ||||| || ||||| ||||| || |||||||| | | || || Sbjct 446143 TGGGTTAGATGGCCACCATCGGGTAGATCCAGACCCATGATGCGGTCATGTGGCCGGCAC 446202 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || || ||||| || |||||| ||| ||||| || || || ||| || ||| Sbjct 446203 ACGCCCGTATAGACGGCCAAATTGGCCGGCGACCCCGAATATGGCTGGACATTGACGCCC 446262 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629 || | | || | | |||||| | ||| | || | ||| || ||||| |||||| Sbjct 446263 CACTGATCCCCGCTGAGGTTGAACAGTTCGAGGCCGCGTTTCTGGGCCAGCAGCTCGATG 446322 Query 127630 CGATCGATAAACTCGTTACCACCATAGTA 127658 | |||||||||||||| || |||||||| Sbjct 446323 CAGTCGATAAACTCGTTGCCGCCATAGTA 446351 >seq4765 Length=3541379 Score = 206 bits (228), Expect = 4e-48 Identities = 955/1489 (64%), Gaps = 56/1489 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 ||||| |||| | ||| |||||| || || ||||| || | | ||| |||||| | | Sbjct 3009332 ACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAA--CAATGTGGCTC 3009389 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | ||||| ||||| ||| || ||||| || || | ||| |||| ||||| || | Sbjct 3009390 GGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGCCCT 3009449 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| |||| || || || || | || || || ||| | ||| || ||| | Sbjct 3009450 GGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGAATC 3009509 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || | || ||||| |||||| | || ||| | || |||||||||||| | | Sbjct 3009510 GTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCGAGG 3009569 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 || ||||| |||||||||||| || || ||||| ||| ||| |||| Sbjct 3009570 CGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGTGGG 3009629 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-----CCGATACGTGAG 97159 |||| ||||||||| |||| |||||| ||||| || || || | Sbjct 3009630 GCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAAT-CG---G 3009685 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 || ||| | || | |||||| |||||| | ||| ||||| |||||||| | Sbjct 3009686 AC-AGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAA 3009744 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCA 97278 ||||||||| |||| ||||||| | ||| | | | || ||||| || | | |||||| Sbjct 3009745 TCCGTACATGCTCTTCAAGGATGC-GTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCA 3009803 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 |||||||| || |||||||||||| ||||| || |||||| |||| || ||||||| | Sbjct 3009804 CCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCG 3009863 Query 97339 CAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG---GTAAAG-TGTTT 97394 | || ||| ||||| || || ||| || |||||| || | | |||| || Sbjct 3009864 CCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGT-GACGCCCGAAAAGACGTAC 3009922 Query 97395 AATCTCAACCTATTGGCAAAGACGGTGC---GTCTGGTGACTAGGAATCTAAACAAGATT 97451 || | || || || || | | | || ||| | | |||||| ||||||||| Sbjct 3009923 GATTTTAAGAAGCTG--AAGGAGGTCACCAAGACT-GTGGCCAAGAATCTGAACAAGATT 3009979 Query 97452 ATCGACAATGCACT-CTATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACC 97510 || ||| || ||| |||||| | || ||| || || || | | ||| || || Sbjct 3009980 ATTGAC-ATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCATCGCCC 3010038 Query 97511 CATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTA--- 97567 ||| || || || || || || ||| || || || ||||| | | |||| Sbjct 3010039 CATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGA 3010098 Query 97568 ---CGAGGACTCGATGCAGTTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACT 97624 |||||| || | |||||| | || || ||||| || || ||| ||| || Sbjct 3010099 AAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGAGCCCT 3010158 Query 97625 GACGGAGAGTTGCCAACTGGCCAGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCC 97684 | | ||||| |||||||| || | || || ||| | ||| | || ||||| Sbjct 3010159 GGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAGCCC 3010218 Query 97685 GACCAGTCGTGGAGAGTTGCACTTCGAC---CGATACTCGGTGCACAGCCAAAAGTGTGA 97741 || ||| | || | |||| | || ||| | || | || || Sbjct 3010219 CGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTCTGGGA 3010278 Query 97742 CTGGTCATCGTTGCGCAAAGACATTGCTC----GGTACGGTTTGAGAAACTCTTTGCTGG 97797 |||| || | || ||| || | || |||| | ||||||||| |||| | Sbjct 3010279 CTGGGCAAAGCTG----AAGGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTCG 3010334 Query 97798 TGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAAC 97857 |||| || ||||||||||| ||||| |||| | | ||||| ||||| || || | Sbjct 3010335 TGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAGC 3010394 Query 97858 CGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACG 97917 ||| ||| | || || || | ||| | || || || || || || |||| Sbjct 3010395 CGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCGAATTCCAGGTGGTCAACC 3010454 Query 97918 TGCACTTGGTTCGAGACTTGGAAC--GGCTCAATCTGTGGAACGATGACATGGCCCAGTT 97975 ||| | | || || | ||| ||| | ||||| | ||||||||| | Sbjct 3010455 ATCACCTATTGCGGGA--TCTAACTGAGCTGGACTTGTGGGATGATGACATGAAGAACCA 3010512 Query 97976 GATCATGTACAACAATGGGTCCATTCAAAACATTACCATCAT--CCCGGAAGAGTTGCGC 98033 |||||| | || | ||| || || || || || ||| ||| ||| ||| ||| Sbjct 3010513 GATCATTTCCAGCCGTGGCTCTATCCAGAATATCGAGGCCATTCCCCAGAA-TGTT-CGC 3010570 Query 98034 AGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGA 98092 | |||||||| || |||||||| || | || | | || | ||||| || || Sbjct 3010571 GATCTGTACAAGACGGTTTGGGAGATCTCTGTGAAATCCAC-CATTAAAATGGCCGCAGA 3010629 Query 98093 CAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA 98152 | |||| | || || ||||||||||||||||| | | || || ||||||| ||| Sbjct 3010630 TCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAACATTCATGTGGCTGAGCCCAACTA 3010689 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 | |||| || |||||||||||| | ||||| ||||| || || || ||||| Sbjct 3010690 TGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGCTGGCCTTAAAACCGGGATGTA 3010749 Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || || | || ||| |||| |||||||||||| || || || ||| Sbjct 3010750 TTACCTCCGCACGAAGCCGGCTGCCAATGCCATACAGTTCACCGTCGAC 3010798 >seq4761 Length=1439414 Score = 147 bits (162), Expect = 3e-30 Identities = 379/569 (67%), Gaps = 14/569 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| |||| || || ||||| ||||||||| |||||| || | ||||| | Sbjct 1350642 GGAGATTTGGGCCCGGTATACGGCTTCCAGTGGCGGCACTTTGGGGCAGAGTATCGCACC 1350583 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| ||||| || ||||| | || || ||| | || | || || || Sbjct 1350582 TGCGACGAC-GACTACAGCGGCCAGGGCATCGACCAGCTGC-GTCAGGTGATCGAGACGA 1350525 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||| |||||| | || ||| | ||| | |||| | |||||||||| ||| | Sbjct 1350524 TAAAGAACAATCCGTCGGACAGGCGCATCATCATGTCCGCATGGAATCCCCTGGATAT-- 1350467 Query 70245 ACCAAA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTACGA--- 70296 |||||| |||| || || || |||||||| |||| ||||| | | || | || Sbjct 1350466 ACCAAAGATGGCGCTGCCGCCATGTCACTGCCTGGCGCAGTTCTTCGTATCCCAGGACCG 1350407 Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 |||| | ||||| || |||| |||||||| || |||||||| || || || || || Sbjct 1350406 TGGCGAGTTGTCCTGTCAGCTGTACCAGAGGAGCGCTGACATGGGTCTGGGCGTGCCATT 1350347 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||||| || || | || | || |||||||| || || | || || ||||| | Sbjct 1350346 CAACATCGCCTCTTACGCCCTGCTTACCCACATGATAGCCCATGTGACAGGTCTGAAGCC 1350287 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 || || || || ||||| ||||||||||| || || ||||||| | || || | Sbjct 1350286 TGGTGACTTTGTTCATACCATGGGCGACGCTCATGTCTACCTAAATCATGTGGATCCGCT 1350227 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGT 70536 |||| ||| || | || ||| | || ||||||||||||| | | || || || Sbjct 1350226 GAAGGAGCAGCTGCAGCGCACTCCGCGTCCGTTTCCCAAGCTGGTGATCAAGCGCAAGGT 1350167 Query 70537 TGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCC 70596 | | ||||| ||| || || || ||| ||| | |||| |||| ||||| Sbjct 1350166 GCAGGACATTGAGGACTTTCGGTTTGAGGACTTTGAGATAGTCGATTACAATCCCTACCC 1350107 Query 70597 TAAGATTCCCATGGTTCTGGCTGTTTAGA 70625 || || | |||| |||| ||||||| Sbjct 1350106 AAAAATCCAGATGGAAATGGCCGTTTAGA 1350078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741011577683160