Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4810 95.1 8e-15 >seq4810 Length=1195048 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||||| || ||||| || || || |||||||| ||||| || || | Sbjct 316974 CGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCG 316915 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||||| ||| || | ||| |||||||| | ||| ||||| || || Sbjct 316914 TCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 316855 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | || |||||| ||| | || || || || Sbjct 316854 TCCTGGATCTTGGCC---TTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTG 316798 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || | ||| || ||||| || |||||| Sbjct 316797 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 316759 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| || | || ||||| || || || |||||||| |||| || || | Sbjct 316518 CGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCG 316459 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||||| ||| || | ||| |||||||| | ||| ||||| || || Sbjct 316458 TCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 316399 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || | | || |||||| ||| | || || || || Sbjct 316398 TCCTGGATCTTGGCCT---TGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTG 316342 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || | ||| || ||||| ||||||||||| Sbjct 316341 ATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTT 316301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318757626690618