Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq4839 107 2e-18 seq4953 89.7 6e-13 >seq4839 Length=149602 Score = 107 bits (118), Expect = 2e-18 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 ||||| ||||||||||| || ||||| | || ||||| || | ||||||||||| Sbjct 72618 CGGAGGGCTTCACCAAACGCCACGGCTTTACCGGCAATAACGTGCATCAGCGGGCCGCCC 72677 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGA 6595 || | ||| ||||| | |||||| || | || || || | | | || || || || Sbjct 72678 TGCAAACCAGGGAACACAGCAGAGTTGATCTTTTTAGCCAATGCTTCGTCATTGGTCAGG 72737 Query 6596 ATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655 || || || ||||| ||||| |||| |||||||| || || | || |||| | || Sbjct 72738 ATCAGACCGCCACGTGGGCCACGCAGGGTTTTATGCGTGGTGGAGGTTACAA--TATGC- 72794 Query 6656 CCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATA 6715 | ||| || || || | | || | |||||| || || ||||||||||| |||||| Sbjct 72795 GCGTATTCCAGCGGGTTCGGATACAGGCCAGCAGCCACCAAACCAGCAAAATGCGCCATA 72854 Query 6716 TCGACCAT 6723 || ||||| Sbjct 72855 TCCACCAT 72862 >seq4953 Length=802672 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 7010 TAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTA 7069 ||| | || || || || || || ||||||||||||||||||||| || | | || | Sbjct 77708 TAAGCAGCTTGATTAGCCTGAGACCCGGAATGAGGTTGAACGTTTACGTATTCCGCACCA 77767 Query 7070 AACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCG 7129 || |||||||| || | | ||| || | |||| | | ||| | | | || || Sbjct 77768 AATAGTTCTTTTGCTCTATTAATGGCTAAAGTCTCAACCTTATCAACATACTCACATCCA 77827 Query 7130 CCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGT 7189 |||||||| || | || |||||||| || || ||||| ||||| |||| ||||| || Sbjct 77828 CCATAATATCGATGACCAGGATATCCTTCTGCGTACTTATTGGTTAAAACTGAACCTTGC 77887 Query 7190 GCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCAAGC 7235 || | |||| | | || || |||||||| ||||| |||| Sbjct 77888 GCAGCCCGAACACCCTTCGAAGCAATATTTTCGGAAGCAAT-AAGC 77932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555327510972360