Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq4839 107 2e-18
seq4953 89.7 6e-13
>seq4839
Length=149602
Score = 107 bits (118), Expect = 2e-18
Identities = 174/248 (70%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535
||||| ||||||||||| || ||||| | || ||||| || | |||||||||||
Sbjct 72618 CGGAGGGCTTCACCAAACGCCACGGCTTTACCGGCAATAACGTGCATCAGCGGGCCGCCC 72677
Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGA 6595
|| | ||| ||||| | |||||| || | || || || | | | || || || ||
Sbjct 72678 TGCAAACCAGGGAACACAGCAGAGTTGATCTTTTTAGCCAATGCTTCGTCATTGGTCAGG 72737
Query 6596 ATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655
|| || || ||||| ||||| |||| |||||||| || || | || |||| | ||
Sbjct 72738 ATCAGACCGCCACGTGGGCCACGCAGGGTTTTATGCGTGGTGGAGGTTACAA--TATGC- 72794
Query 6656 CCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATA 6715
| ||| || || || | | || | |||||| || || ||||||||||| ||||||
Sbjct 72795 GCGTATTCCAGCGGGTTCGGATACAGGCCAGCAGCCACCAAACCAGCAAAATGCGCCATA 72854
Query 6716 TCGACCAT 6723
|| |||||
Sbjct 72855 TCCACCAT 72862
>seq4953
Length=802672
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/226 (69%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 7010 TAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTA 7069
||| | || || || || || || ||||||||||||||||||||| || | | || |
Sbjct 77708 TAAGCAGCTTGATTAGCCTGAGACCCGGAATGAGGTTGAACGTTTACGTATTCCGCACCA 77767
Query 7070 AACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCG 7129
|| |||||||| || | | ||| || | |||| | | ||| | | | || ||
Sbjct 77768 AATAGTTCTTTTGCTCTATTAATGGCTAAAGTCTCAACCTTATCAACATACTCACATCCA 77827
Query 7130 CCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGT 7189
|||||||| || | || |||||||| || || ||||| ||||| |||| ||||| ||
Sbjct 77828 CCATAATATCGATGACCAGGATATCCTTCTGCGTACTTATTGGTTAAAACTGAACCTTGC 77887
Query 7190 GCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCAAGC 7235
|| | |||| | | || || |||||||| ||||| ||||
Sbjct 77888 GCAGCCCGAACACCCTTCGAAGCAATATTTTCGGAAGCAAT-AAGC 77932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555327510972360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |