Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4765 167 5e-36 seq4678 91.5 3e-13 >seq4765 Length=3541379 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| || |||||||| ||||||||||| || || | || ||||| || || Sbjct 2921424 TGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 2921483 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 2921484 TTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 2921543 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || || ||||| ||||| || || || ||||| || || Sbjct 2921544 GCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 2921603 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || |||||||| |||||| Sbjct 2921604 AGGGTCTTCACGAAGATCTGCATCTTGTGT 2921633 >seq4678 Length=1229792 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| || ||||| ||||| || ||| || | || ||||||||||| | || Sbjct 1146817 GATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCCAGGAGGTACAGATCACCGAG 1146758 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 ||| | || ||||| || |||||||| || || || || | ||||| |||||||||||| Sbjct 1146757 GCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGAGATGTACAGT 1146698 Query 268997 CTATTAATAGATACTTATAT 269016 | | || || ||||| || Sbjct 1146697 GTGCTGATCGACACTTACAT 1146678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151322558466828