Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq4969 114 1e-20 >seq4969 Length=1161901 Score = 114 bits (126), Expect = 1e-20 Identities = 181/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCT-CTTG 5298 ||||| || ||||||||| || ||||| || ||||| |||| || ||| || Sbjct 226203 CCGGTGGAGCCGAATCCACCTTCTCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGCTCC 226144 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | || | || | | ||||| ||||| || | ||| || || | ||| || ||| || Sbjct 226143 AGCTCC-GGATAGAAGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTTCAC 226085 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| || || || |||| ||| |||||||| || || | ||||| |||||||| Sbjct 226084 CTCGAACTCCACGT--CCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAGTCC 226027 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||||| || ||||||||||| |||| || || || || ||||| ||||| Sbjct 226026 TCGTCCACCACGCCGGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGTGGG 225967 Query 5477 GCTATGCGTCCGTAG 5491 || | |||||||||| Sbjct 225966 GCCACGCGTCCGTAG 225952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447721626439920