Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq4969 114 1e-20
>seq4969
Length=1161901
Score = 114 bits (126), Expect = 1e-20
Identities = 181/255 (71%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCT-CTTG 5298
||||| || ||||||||| || ||||| || ||||| |||| || ||| ||
Sbjct 226203 CCGGTGGAGCCGAATCCACCTTCTCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGCTCC 226144
Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358
| || | || | | ||||| ||||| || | ||| || || | ||| || ||| ||
Sbjct 226143 AGCTCC-GGATAGAAGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTTCAC 226085
Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416
||| || || || |||| ||| |||||||| || || | ||||| ||||||||
Sbjct 226084 CTCGAACTCCACGT--CCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAGTCC 226027
Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476
||||| | ||||| || ||||||||||| |||| || || || || ||||| |||||
Sbjct 226026 TCGTCCACCACGCCGGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGTGGG 225967
Query 5477 GCTATGCGTCCGTAG 5491
|| | ||||||||||
Sbjct 225966 GCCACGCGTCCGTAG 225952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447721626439920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |