Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4969 190 2e-43 >seq4969 Length=1161901 Score = 190 bits (210), Expect = 2e-43 Identities = 219/290 (76%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| |||||||| ||| | || | || || || ||||| | ||| Sbjct 226206 ACGCCGGTGGAGCCGAATCCACCTTCTCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGC 226147 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || |||||||||||| | ||| || || |||||||| ||| Sbjct 226146 TCCAGCTCCGGATA-GAAGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTT 226088 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || || |||| |||||||||||| ||||||| |||||| |||||| Sbjct 226087 CACCTCGAACTCCACGT--CCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAG 226030 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| || |||||||||||||||| ||| || ||||| |||||||| Sbjct 226029 TCCTCGTCCACCACGCCGGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGT 225970 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||||||| |||||| | || ||||| | ||| | ||||||||| || Sbjct 225969 GGGGCCACGCGTCCGTAGGAGCCCTCGGGCACCTGGACCTGCAGGTCGGT 225920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430027454538392