Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq4969 190 2e-43
>seq4969
Length=1161901
Score = 190 bits (210), Expect = 2e-43
Identities = 219/290 (76%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| ||||| |||||||| ||| | || | || || || ||||| | |||
Sbjct 226206 ACGCCGGTGGAGCCGAATCCACCTTCTCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGC 226147
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
|||| || || | | || |||||||||||| | ||| || || |||||||| |||
Sbjct 226146 TCCAGCTCCGGATA-GAAGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTT 226088
Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677
|||||||| || || |||| |||||||||||| ||||||| |||||| ||||||
Sbjct 226087 CACCTCGAACTCCACGT--CCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAG 226030
Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737
|| |||| | |||||| || |||||||||||||||| ||| || ||||| ||||||||
Sbjct 226029 TCCTCGTCCACCACGCCGGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGT 225970
Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787
|| |||||||| |||||| | || ||||| | ||| | ||||||||| ||
Sbjct 225969 GGGGCCACGCGTCCGTAGGAGCCCTCGGGCACCTGGACCTGCAGGTCGGT 225920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430027454538392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |