Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 107 2e-18
seq4863 102 7e-17
seq4810 84.2 2e-11
>seq4644
Length=1132839
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||||| | | ||| ||||| || || |||||| || |||||||| || |
Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || || ||| | | | | ||||| |||| | |||| |
Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || ||||| || || |||||||| ||||||||
Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||||| | | ||| || || || ||| |||||| || |||||||| || |
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||| ||||||||||| || || | || |||||||||||||| ||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || || ||| | | | | ||||| |||| | |||| |
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || ||||| ||||| ||||| || ||||||||
Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||||| | | ||| || || || ||| |||||| || |||||||| || |
Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || || ||| | | | | ||||| || | || || |
Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || | ||||||||||| ||||||||
Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/228 (69%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||||| | | ||| || || || || |||||| || |||||||| || |
Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || | |||||||||||||| ||| || |||| | |||||||||||| ||
Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || || ||| | | | | ||||| |||| | ||||
Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 751899
Query 48680 TCGACTGTTATGGTTTTACCG-GTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || ||| || ||||| |||||||| ||||||||
Sbjct 751898 TCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | | | ||| || || || || |||||| || |||||||| || |
Sbjct 752762 CCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752703
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 752702 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGT 752643
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | |||||||| ||||| ||| | | | | ||||| |||| | ||||
Sbjct 752642 ATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 752583
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || || || |||||||| ||||||||
Sbjct 752582 TCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
>seq4863
Length=1240122
Score = 102 bits (112), Expect = 7e-17
Identities = 153/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || || |||||| || |||||||| || | || | || || | ||||
Sbjct 1064088 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGC-CATCCT 1064030
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||| ||| | | || | |||||||||||| || | | |||||||||
Sbjct 1064029 CCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 1063970
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||||| | | | ||||| || | || |||| ||| | || ||||| |
Sbjct 1063969 GGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCT 1063910
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
| |||||||| |||||||| || |||||||| |||
Sbjct 1063909 TGCCGGTGAGGGTTTTCACGAAGATCTGCATGGTG 1063875
>seq4810
Length=1195048
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||||| | | || || ||||| || |||||| || |||||||| ||||
Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || | |||||||||||||| ||| | | || | ||||||||| || ||
Sbjct 316698 AGAGTG-CGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||||| | | |||||||||| | |||
Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || ||||| | ||| || || || ||||||||
Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421224806111141
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |