Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq1269 89.7 1e-13 >seq1269 Length=15413 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 15439 GACGCGCGGGGCAACGGCCAATACCTCGCAGAAGTCGCGATGCAGCGCTACGGCGCATCG 15498 || ||||||||||| ||||| || || |||||||| | ||||||| |||||| ||| Sbjct 9577 GATGCGCGGGGCAATGGCCAGTATCTGGCAGAAGTGACTGTGCAGCGTTACGGCAG-TCG 9519 Query 15499 CGCATCCAGCAAGTGATGCTGTCCGAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAG 15558 | | || ||||||||||| || |||||||| || ||||||| || ||||| Sbjct 9518 TG--TTGAGGCCGTGATGCTGTCTGAAAGCTGGTATCGAGAAAACATGCCACCTATGAAG 9461 Query 15559 GCGGCGTTCGAAGACGGCACGATCGACGGCCTCCCG 15594 || ||||| |||||||| | | | || |||||||| Sbjct 9460 GCTGCGTTTGAAGACGGAATGCT-GA--GCCTCCCG 9428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117464828407820