Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4570 123 1e-23 seq5107 120 2e-22 seq4971 118 6e-22 seq4688 118 6e-22 seq4685 111 8e-20 >seq4570 Length=1234237 Score = 123 bits (136), Expect = 1e-23 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | | |||||| |||||| || |||||||||||| |||||||||| |||||||| Sbjct 519141 AAACAAAAAATTAAAAAAAAAATAACATTGGCCCATGAGGGGATCGAACCCGCGACCTTC 519082 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| ||||||||||||||| Sbjct 519081 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 519040 Score = 114 bits (126), Expect = 7e-21 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| | | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 512528 AAAAAAAAGTAGACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 512587 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||||||||||| Sbjct 512588 GACGCTCTAACCAGCTGAGCTAATGGGCCG 512617 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 518491 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 518550 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 518551 TGAGCTAATGGGCC 518564 >seq5107 Length=704657 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 155540 TAAAAAATGAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 155483 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 155482 CGCTCTAACCAACTGAGCTAATGGGCC 155456 Score = 118 bits (130), Expect = 6e-22 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || ||||||| | |||||||||| |||||||||| |||||||||||||||| Sbjct 155181 GAAATACAAAAAAATAATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 155122 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 155121 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 155088 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 156391 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 156332 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 156331 TGAGCTAATGGGCC 156318 >seq4971 Length=1587304 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 149371 AATAAAAAATACTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 149312 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 149311 GACGCTCTAACCAACTGAGCTAATGGGCC 149283 >seq4688 Length=677716 Score = 118 bits (130), Expect = 6e-22 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||| || || ||||||| ||||||||||| |||||||||| ||||||||||| Sbjct 470101 ATATAAAA--AACAAAAAATTTG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 470157 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||| ||||||||||||||||||||| Sbjct 470158 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 470197 >seq4685 Length=792119 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || ||||| | | | |||||||||| |||||||||| |||||||||||||||| Sbjct 644877 AATAAACAAAAACTTATTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 644818 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| |||| |||||||||||||||| Sbjct 644817 AGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 644783 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474816023716