Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4570 123 1e-23
seq5107 120 2e-22
seq4971 118 6e-22
seq4688 118 6e-22
seq4685 111 8e-20
>seq4570
Length=1234237
Score = 123 bits (136), Expect = 1e-23
Identities = 89/102 (87%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||| | | |||||| |||||| || |||||||||||| |||||||||| ||||||||
Sbjct 519141 AAACAAAAAATTAAAAAAAAAATAACATTGGCCCATGAGGGGATCGAACCCGCGACCTTC 519082
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||| |||| |||||||||||||||
Sbjct 519081 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 519040
Score = 114 bits (126), Expect = 7e-21
Identities = 79/90 (88%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| | | ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 512528 AAAAAAAAGTAGACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 512587
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| |||| ||||||||||||||||
Sbjct 512588 GACGCTCTAACCAGCTGAGCTAATGGGCCG 512617
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 518491 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 518550
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 518551 TGAGCTAATGGGCC 518564
>seq5107
Length=704657
Score = 120 bits (132), Expect = 2e-22
Identities = 79/87 (91%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| || |||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 155540 TAAAAAATGAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 155483
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||
Sbjct 155482 CGCTCTAACCAACTGAGCTAATGGGCC 155456
Score = 118 bits (130), Expect = 6e-22
Identities = 82/94 (87%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| || ||||||| | |||||||||| |||||||||| ||||||||||||||||
Sbjct 155181 GAAATACAAAAAAATAATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 155122
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||| ||||||||||||||||||||
Sbjct 155121 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 155088
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 156391 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 156332
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 156331 TGAGCTAATGGGCC 156318
>seq4971
Length=1587304
Score = 118 bits (130), Expect = 6e-22
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 149371 AATAAAAAATACTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 149312
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 149311 GACGCTCTAACCAACTGAGCTAATGGGCC 149283
>seq4688
Length=677716
Score = 118 bits (130), Expect = 6e-22
Identities = 87/100 (87%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490
||||| || || ||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 470101 ATATAAAA--AACAAAAAATTTG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 470157
Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||||||||||||| |||||||||||||||||||||
Sbjct 470158 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 470197
>seq4685
Length=792119
Score = 111 bits (122), Expect = 8e-20
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| || ||||| | | | |||||||||| |||||||||| ||||||||||||||||
Sbjct 644877 AATAAACAAAAACTTATTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 644818
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||| |||| ||||||||||||||||
Sbjct 644817 AGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 644783
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261474816023716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |