Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3415 168 1e-37 seq3359 168 1e-37 seq2692 168 1e-37 seq2259 168 1e-37 seq3818 163 4e-36 seq3728 163 4e-36 seq3159 161 2e-35 seq4164 123 4e-24 seq5082 122 1e-23 seq4768 102 1e-17 >seq3415 Length=1159 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 653 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 712 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 713 CCGTCGTCTGGCTCGGCGTGGCGGTGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 772 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 773 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 832 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 833 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 892 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 893 CCGCACCCTGTACGGTTTCGGCGGTTAA 920 >seq3359 Length=1014 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 556 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 615 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 616 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 675 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 676 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 735 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 736 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 795 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 796 CCGCACCCTGTACGGTTTCGGCGGTTAA 823 >seq2692 Length=1061 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 565 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 506 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 505 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 446 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 445 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 386 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 385 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 326 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 325 CCGCACCCTGTACGGTTTCGGCGGTTAA 298 >seq2259 Length=1993 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 144 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 203 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 204 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 263 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 264 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 323 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 324 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 383 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 384 CCGCACCCTGTACGGTTTCGGCGGTTAA 411 >seq3818 Length=18506 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 382 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 323 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 322 CCGTCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 263 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 262 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 203 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 202 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 143 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 142 CCGCACCCTGTACGGTTTCGGCGGTTAA 115 >seq3728 Length=1202 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 1153 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 1094 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 1093 CTGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 1034 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | || | ||| ||| ||| |||||| || |||||| || Sbjct 1033 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGCTCCGTGATGCCGTCACCTATACTGA 974 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 973 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 914 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 913 CCGCACCCTGTACGGTTTCGGCGGTTAA 886 >seq3159 Length=3224 Score = 161 bits (178), Expect = 2e-35 Identities = 198/269 (74%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 2687 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 2628 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 2627 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 2568 Query 16552 TCGTGATGTTTTGAAGAT-CTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| ||||| | || | ||| ||| |||| |||||| || ||| || | Sbjct 2567 CCGTGGTGTTCTGAAGGTGTTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTG 2508 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | ||||| ||||| ||||||| ||||||| || |||| | |||| Sbjct 2507 AACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAG 2448 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 2447 GCCGCACCCTGTACGGTTTCGGCGGTTAA 2419 >seq4164 Length=12022 Score = 123 bits (136), Expect = 4e-24 Identities = 186/268 (69%), Gaps = 21/268 (8%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 3683 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 3742 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | || Sbjct 3743 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACT------------CAT 3790 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||||| | || | ||| ||| |||| |||||| || ||| || || Sbjct 3791 TC---------TGAAGGTGTTTTTGGAGAACGTGATCCGTGATGCCGTCACCTACACTGA 3841 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || |||| | ||||| Sbjct 3842 ACACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTCTACGCCCTGAAGAGACAAGG 3901 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 3902 CCGCACCCTGTACGGTTTCGGCGGTTAA 3929 >seq5082 Length=12057 Score = 122 bits (134), Expect = 1e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 3642 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATCACAAAGCCAGCCAT 3701 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || ||||| | || ||| | | || || || | Sbjct 3702 CCGTCGTCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGACTCATTTACGAGGAAAC 3761 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 |||| |||| ||||| | || | ||| ||| |||| |||||| Sbjct 3762 CCGTGGTGTTCTGAAGGTGTTTTTGGAGAACGTGATCCGTGATGC 3806 >seq4768 Length=2945258 Score = 102 bits (112), Expect = 1e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 2639639 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 2639698 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| || || || |||||| |||| || ||| | ||||| |||| Sbjct 2639699 TCGCCGCTTGGCCCGTCGCGGCGGTGTGAAGCGTATCTCCGGCTTGATTTATGAGGAGAC 2639758 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 2639759 TCGCGGTGT 2639767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070499547713