Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq4764 145 7e-30
seq4678 98.7 1e-15
>seq4764
Length=1750656
Score = 145 bits (160), Expect = 7e-30
Identities = 139/178 (78%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776
||||| ||||| || || | | | ||||||||||||||||| ||||| ||||||||||
Sbjct 341614 GAGGGCAAAATGCATGGTTTCTTGCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGAGC 341673
Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836
| || || ||||||||||||||||| | || || ||||| | ||||| || |||
Sbjct 341674 CCCACGCCGGAGCAGGCGCTCGAGTACGCCATCCTGCTGAACGACAAGTACAGCCTGGAC 341733
Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATA 71894
|| |||||||| ||||| ||||| |||||||||||| ||| |||| | |||||||
Sbjct 341734 GGGCGCGATCCCAACGGCTATGTGGGTTGCATGTGGTCCATCGGCGGCGTCCACGATA 341791
>seq4678
Length=1229792
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 119626 TGGCCGCTCCGAACCGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCT 119685
||||| | || | |||| ||||||||||| || ||||| || || |||||||| |
Sbjct 1146103 TGGCCACGCCCATGCGCTGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCAT 1146162
Query 119686 CAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGC 119745
| || || || | | ||| || | ||| ||||| |||||| | ||| | ||
Sbjct 1146163 CCAGCGAGATCATCTCCATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGC 1146222
Query 119746 CCAACTCGAACAACAGTCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAAT 119805
||| ||||| || ||| ||||| ||||||||||| ||||| | |||| | | |
Sbjct 1146223 CCAGCTCGACCAGCAGACGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGT 1146282
Query 119806 TCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCG 119865
||||||| | || | ||||| | |||| ||| | ||| |||| |||||||| || |
Sbjct 1146283 TCATGCCGATCAGATTAACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAG 1146342
Query 119866 CTTC 119869
| ||
Sbjct 1146343 CGTC 1146346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478631639957520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |