Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 387 4e-102
seq5094 118 3e-21
>seq4765
Length=3541379
Score = 387 bits (428), Expect = 4e-102
Identities = 1154/1755 (66%), Gaps = 59/1755 (3%)
Strand=Plus/Plus
Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492
|| ||| | |||| || || |||||||| ||| | ||||| || || ||||| ||||||
Sbjct 3009017 AACGGTAAGATTGCCGAGCGGCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCAT 3009076
Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCA 363550
| || | |||||||| | || ||||| || | | | || || | | | |||
Sbjct 3009077 GGTGAAGACATCGATGCCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCT--TCA 3009134
Query 363551 CGCACGCCACGCCAACAATGTACAATGCTG----GAACTCGTAATCCACAGATGTCTTCT 363606
| |||||| |||| || ||| | |||| |||| | || ||| | || ||
Sbjct 3009135 CACACGCCTCGCCCACCCTGTTCGCCGCTGCCACGAACCGG----CCGCAGCTCTCGTCC 3009190
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || || | |||| ||||| ||||| || || ||| | | | | |
Sbjct 3009191 TGCTTCCTCCTGACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACAC 3009250
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724
||||| | || |||||| || ||||| ||||| || || |||| | ||||
Sbjct 3009251 TGTGCCATGATCTCCAAGTCGGCGGGCGGCATTGGCCTGAATG--TCCATTGCATCCGTG 3009308
Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
| || || || ||| | |||||| || ||| ||||| || ||||||||||| |
Sbjct 3009309 CCAAGGGCACTTCCATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGC 3009368
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
| || || ||||| || ||||||| ||||||||||| || ||||| || || |
Sbjct 3009369 GAGTCTTCAACAATGTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCT 3009428
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
|||| || ||| | ||||| || | ||| | || ||||| | || || || |
Sbjct 3009429 TTGCCATCTATTTGGAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGA 3009488
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|||| || || ||||| ||||| || ||||| |||||||| || ||| | | || |
Sbjct 3009489 ACACCGGCAAGGAGGAGAATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATC 3009548
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024
|||||||||||||| ||||| | | || ||||| || | ||||| ||| | ||||
Sbjct 3009549 TCTTTATGAAGCGCGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTC 3009608
Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084
| || || ||||| ||||| ||||| | || || ||| || || || | |
Sbjct 3009609 CCGGCCTGCAGGATGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCG 3009668
Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144
|||||||||| | |||| || || ||| || ||||| |||||||| || |||
Sbjct 3009669 AGGGAAAGGCCAATCGGACAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGC 3009728
Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204
|| | ||||| || | || || ||| | | ||| ||| |||||||| | ||| ||| |
Sbjct 3009729 AGGTGGAGACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATC 3009788
Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264
||||| | | || || || || ||||| || || || || || | || ||| ||
Sbjct 3009789 AGCAGAATGTGGGCACCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCT 3009848
Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----- 364319
| |||||||||| ||||| || ||||| ||||| ||||| || ||||||
Sbjct 3009849 CGCCCGACGAGATCGCCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGC 3009908
Query 364320 ---AAAAGATGGTAC-TTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTT 364375
|||||| |||| ||| | || | || | || || ||| | || |
Sbjct 3009909 CCGAAAAGA-CGTACGATTTTA-----AGAAGCTGAAGGAGGTCACCAAGACTGTGGCCA 3009962
Query 364376 GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTA 364435
||||| ||||| |||| |||| || |||||||| | || || ||| | || |
Sbjct 3009963 AGAATCTGAACAAGATTATTGACATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGA 3010022
Query 364436 ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGC 364495
||||| | |||||||| ||||| |||| || ||||| ||||| || | || || ||
Sbjct 3010023 ATATGAGGCATCGCCCCATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGA 3010082
Query 364496 TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555
| | | | | || || || || | || ||| | ||||||||||||| |
Sbjct 3010083 TGAGATTCCCCTACGAAAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGA 3010142
Query 364556 TGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615
| |||| || || || || ||||| |||| | | | || ||| |
Sbjct 3010143 TATATTATGGAGCCCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAA 3010202
Query 364616 CTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGG---AATGTC 364671
| || ||||| ||| | | || |||||| |||||| || | ||| || ||
Sbjct 3010203 CCTACGAGGGCAGCCC-CGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGT- 3010260
Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTA 364729
|| ||| | || ||| |||||| | ||| | | | | | ||||| || ||
Sbjct 3010261 AC-CCA-CGAACCTCTGGGACTGGGCAAAGCTGAAGGAATCGA--TCAAGAAACACGGCG 3010316
Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789
| | ||||| || | || |||||||||||||| || ||||| ||||| | || |
Sbjct 3010317 TTAGAAACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCA 3010376
Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849
||||||| | |||||| |||| || | ||| | ||| ||||||| ||||| ||||| |
Sbjct 3010377 ACAACGAATCCTTCGAGCCGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCG 3010436
Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909
|||| | ||| || || | ||||| | |||||| | || | | |||||| ||
Sbjct 3010437 AATTCCAGGTGGTCAACCATCACCTATTGCGGGATCTAACTGAGCTGGACTTGTGGGATG 3010496
Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG--ATT 364967
| |||||||||| | ||||| || ||| ||| | ||||| | || ||| |||
Sbjct 3010497 ATGACATGAAGAACCAGATCATTTCCAGCCGTGGCTCTATCCAGAATA-TCGAGGCCATT 3010555
Query 364968 -TCCAGAA-GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC-- 365023
|||||| | || | | | ||||| || || ||||| || || || ||| ||
Sbjct 3010556 CCCCAGAATGTTCGCGA---TCTGTACAAGACGGTTTGGGAGATCTC--TGTGAAATCCA 3010610
Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083
|||| | ||||| || ||||||||||| |||||| |||||| || ||||| ||| ||
Sbjct 3010611 CCATTAAAATGGCCGCAGATCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAAC--AT 3010668
Query 365084 TCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATC 365141
||| || || |||| | || | |||||| |||||||| || || ||| |||||| |
Sbjct 3010669 TCATGTGGCTGAGCCCAACTATGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGC 3010728
Query 365142 CGGTCTTAAGACAGG 365156
|| ||||| || ||
Sbjct 3010729 TGGCCTTAAAACCGG 3010743
>seq5094
Length=366253
Score = 118 bits (130), Expect = 3e-21
Identities = 215/311 (69%), Gaps = 3/311 (1%)
Strand=Plus/Plus
Query 111583 AATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGA 111642
||||| | ||||| ||||| |||||||| || ||| ||| | || || ||| | |
Sbjct 188357 AATTAAA-AATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAA 188415
Query 111643 GTGCATGGAACCCAAATG-CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701
|||| ||||| ||| | | |||||||| | ||||||| || || |||||| | ||||
Sbjct 188416 GTGCCTGGAATCCAGAAGACATTGGAAGTA-TGGCACTCCCTCCGTGTCATGTAATGTTT 188474
Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761
|| ||||| || ||||||| | || ||||| |||||||||| || || |||
Sbjct 188475 CAATTTTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATT 188534
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
||||| ||||||||||| || || ||||| || || | ||| |||||| || |
Sbjct 188535 TTCCTTGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAA 188594
Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881
| ||| | || ||||| || |||| | | |||||||| || ||||||
Sbjct 188595 GAGGTAGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGT 188654
Query 111882 AACCACATTGA 111892
|| || |||||
Sbjct 188655 AATCATATTGA 188665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303267749320262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |