Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4765 387 4e-102 seq5094 118 3e-21 >seq4765 Length=3541379 Score = 387 bits (428), Expect = 4e-102 Identities = 1154/1755 (66%), Gaps = 59/1755 (3%) Strand=Plus/Plus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 || ||| | |||| || || |||||||| ||| | ||||| || || ||||| |||||| Sbjct 3009017 AACGGTAAGATTGCCGAGCGGCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCAT 3009076 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCA 363550 | || | |||||||| | || ||||| || | | | || || | | | ||| Sbjct 3009077 GGTGAAGACATCGATGCCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCT--TCA 3009134 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTG----GAACTCGTAATCCACAGATGTCTTCT 363606 | |||||| |||| || ||| | |||| |||| | || ||| | || || Sbjct 3009135 CACACGCCTCGCCCACCCTGTTCGCCGCTGCCACGAACCGG----CCGCAGCTCTCGTCC 3009190 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||| ||||| ||||| || || ||| | | | | | Sbjct 3009191 TGCTTCCTCCTGACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACAC 3009250 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 ||||| | || |||||| || ||||| ||||| || || |||| | |||| Sbjct 3009251 TGTGCCATGATCTCCAAGTCGGCGGGCGGCATTGGCCTGAATG--TCCATTGCATCCGTG 3009308 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | || || || ||| | |||||| || ||| ||||| || ||||||||||| | Sbjct 3009309 CCAAGGGCACTTCCATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGC 3009368 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || ||||| || ||||||| ||||||||||| || ||||| || || | Sbjct 3009369 GAGTCTTCAACAATGTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCT 3009428 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || ||| | ||||| || | ||| | || ||||| | || || || | Sbjct 3009429 TTGCCATCTATTTGGAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGA 3009488 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||| || || ||||| ||||| || ||||| |||||||| || ||| | | || | Sbjct 3009489 ACACCGGCAAGGAGGAGAATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATC 3009548 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 |||||||||||||| ||||| | | || ||||| || | ||||| ||| | |||| Sbjct 3009549 TCTTTATGAAGCGCGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTC 3009608 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || ||||| ||||| ||||| | || || ||| || || || | | Sbjct 3009609 CCGGCCTGCAGGATGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCG 3009668 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||||||||| | |||| || || ||| || ||||| |||||||| || ||| Sbjct 3009669 AGGGAAAGGCCAATCGGACAGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGC 3009728 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 || | ||||| || | || || ||| | | ||| ||| |||||||| | ||| ||| | Sbjct 3009729 AGGTGGAGACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATC 3009788 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| | | || || || || ||||| || || || || || | || ||| || Sbjct 3009789 AGCAGAATGTGGGCACCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCT 3009848 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----- 364319 | |||||||||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 3009849 CGCCCGACGAGATCGCCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGC 3009908 Query 364320 ---AAAAGATGGTAC-TTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTT 364375 |||||| |||| ||| | || | || | || || ||| | || | Sbjct 3009909 CCGAAAAGA-CGTACGATTTTA-----AGAAGCTGAAGGAGGTCACCAAGACTGTGGCCA 3009962 Query 364376 GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTA 364435 ||||| ||||| |||| |||| || |||||||| | || || ||| | || | Sbjct 3009963 AGAATCTGAACAAGATTATTGACATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGA 3010022 Query 364436 ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGC 364495 ||||| | |||||||| ||||| |||| || ||||| ||||| || | || || || Sbjct 3010023 ATATGAGGCATCGCCCCATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGA 3010082 Query 364496 TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 | | | | | || || || || | || ||| | ||||||||||||| | Sbjct 3010083 TGAGATTCCCCTACGAAAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGA 3010142 Query 364556 TGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 | |||| || || || || ||||| |||| | | | || ||| | Sbjct 3010143 TATATTATGGAGCCCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAA 3010202 Query 364616 CTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGG---AATGTC 364671 | || ||||| ||| | | || |||||| |||||| || | ||| || || Sbjct 3010203 CCTACGAGGGCAGCCC-CGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGT- 3010260 Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTA 364729 || ||| | || ||| |||||| | ||| | | | | | ||||| || || Sbjct 3010261 AC-CCA-CGAACCTCTGGGACTGGGCAAAGCTGAAGGAATCGA--TCAAGAAACACGGCG 3010316 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 | | ||||| || | || |||||||||||||| || ||||| ||||| | || | Sbjct 3010317 TTAGAAACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCA 3010376 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 ||||||| | |||||| |||| || | ||| | ||| ||||||| ||||| ||||| | Sbjct 3010377 ACAACGAATCCTTCGAGCCGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCG 3010436 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 |||| | ||| || || | ||||| | |||||| | || | | |||||| || Sbjct 3010437 AATTCCAGGTGGTCAACCATCACCTATTGCGGGATCTAACTGAGCTGGACTTGTGGGATG 3010496 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG--ATT 364967 | |||||||||| | ||||| || ||| ||| | ||||| | || ||| ||| Sbjct 3010497 ATGACATGAAGAACCAGATCATTTCCAGCCGTGGCTCTATCCAGAATA-TCGAGGCCATT 3010555 Query 364968 -TCCAGAA-GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC-- 365023 |||||| | || | | | ||||| || || ||||| || || || ||| || Sbjct 3010556 CCCCAGAATGTTCGCGA---TCTGTACAAGACGGTTTGGGAGATCTC--TGTGAAATCCA 3010610 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 |||| | ||||| || ||||||||||| |||||| |||||| || ||||| ||| || Sbjct 3010611 CCATTAAAATGGCCGCAGATCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAAC--AT 3010668 Query 365084 TCA--TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATC 365141 ||| || || |||| | || | |||||| |||||||| || || ||| |||||| | Sbjct 3010669 TCATGTGGCTGAGCCCAACTATGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGC 3010728 Query 365142 CGGTCTTAAGACAGG 365156 || ||||| || || Sbjct 3010729 TGGCCTTAAAACCGG 3010743 >seq5094 Length=366253 Score = 118 bits (130), Expect = 3e-21 Identities = 215/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 111583 AATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGA 111642 ||||| | ||||| ||||| |||||||| || ||| ||| | || || ||| | | Sbjct 188357 AATTAAA-AATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAA 188415 Query 111643 GTGCATGGAACCCAAATG-CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701 |||| ||||| ||| | | |||||||| | ||||||| || || |||||| | |||| Sbjct 188416 GTGCCTGGAATCCAGAAGACATTGGAAGTA-TGGCACTCCCTCCGTGTCATGTAATGTTT 188474 Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 || ||||| || ||||||| | || ||||| |||||||||| || || ||| Sbjct 188475 CAATTTTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATT 188534 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| ||||||||||| || || ||||| || || | ||| |||||| || | Sbjct 188535 TTCCTTGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAA 188594 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | ||| | || ||||| || |||| | | |||||||| || |||||| Sbjct 188595 GAGGTAGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGT 188654 Query 111882 AACCACATTGA 111892 || || ||||| Sbjct 188655 AATCATATTGA 188665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303267749320262