Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4765 91.5 1e-13 >seq4765 Length=3541379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 2921566 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2921507 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||||| || ||||||| | | | | || || |||||| Sbjct 2921506 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 2921447 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || ||||| | || || ||| Sbjct 2921446 ATTCAGAAGGAGTCTACCTTGCACTTGGTG 2921417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 |||||||| || || | ||| ||||| ||||| || | | |||||||| || || || Sbjct 3010794 ACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTA 3010735 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 | ||| || ||| || ||| ||||||||| | | | ||| |||| | ||| Sbjct 3010734 AGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCC 3010675 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 ||| | |||| |||||||||||||||||| | | || | ||||||||||| || Sbjct 3010674 ACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTA 3010615 Query 132044 AACAATACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGA 132103 | |||| || |||||| | |||||| | || | || | || ||| Sbjct 3010614 ATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCGAACATTCTGGGGA 3010555 Query 132104 ATGTCATCGATATTCTGTACAGATCC 132129 ||| | ||||||||||| | ||| || Sbjct 3010554 ATGGCCTCGATATTCTGGATAGAGCC 3010529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429909061956855