Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4644 116 3e-21 seq4810 102 7e-17 seq4863 96.9 3e-15 >seq4644 Length=1132839 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| |||||| || |||||||| || ||||||||||||| Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || ||||| || | || | ||||| || || ||| Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| ||||||||||| || || ||||| ||||||||| Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Score = 105 bits (116), Expect = 5e-18 Identities = 184/266 (69%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCC-GCATTTACCCTCCTCGTAGCCTCAGTACCA 16730 ||||||| |||||| || || |||| | ||| ||||| || || | || |||| Sbjct 752797 TTTATTTGGAAATGTGTTCAGCTTAAGCCTGGATT---CCTCCGCGGAGACGGAGCACCA 752741 Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATT 16790 || || || |||||||| || ||||||||||||| | ||| ||||||||| | Sbjct 752740 AGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCT 752681 Query 16791 GTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT 16850 | ||||| || | || | ||||| || || || | ||||| ||||| |||| Sbjct 752680 GCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTT 752621 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 |||||| | | | |||||| |||||| ||||| |||||||| ||||| | Sbjct 752620 TGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAG 752561 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| ||||||||| Sbjct 752560 TCAGGGTCTTCACAAAGATCTGCATT 752535 Score = 102 bits (112), Expect = 7e-17 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| | Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||| || |||| || ||||| || || ||| Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 751901 Query 16887 TTTCCACGGTGATGGTTTTTCCG-GTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| |||||| || || || || ||||| ||||||||| Sbjct 751900 CTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||||| Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || ||||| || | || | ||||| || || ||| Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| |||||||| || || || || || ||||||||| Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||||| Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || ||||| || | || | ||||| || || ||| Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | ||||| || || Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 |||| ||||||||| ||||| |||| ||||| ||||| |||||||||| Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621 >seq4810 Length=1195048 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || |||||||| |||| | Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || ||| | || || ||||| ||||| || Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | |||||| |||||| Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGGAGGGCTCGA 316809 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || ||||| || |||||||| Sbjct 316808 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || || ||||||||||| || |||||||| |||| | Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || ||| | || || ||||| ||||| || Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | |||||| |||||| Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATTGTGTCGGAGGGCTCGA 316353 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| || || ||||||| || ||||| || || ||||| ||| Sbjct 316352 CCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTTG 316300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || || || |||||||| || ||||||||||| | Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || || ||| | || || ||||| ||||| || Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | || ||| |||||| Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTATCGGAGGGCTCGA 316581 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||||| || ||||| || |||||||| Sbjct 316580 CCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 >seq4863 Length=1240122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | ||| Sbjct 1064090 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1064031 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || || ||||| || || || | |||||| ||||| Sbjct 1064030 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1063971 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 1063970 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGG 1063913 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || |||||||| Sbjct 1063912 TCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405062618831590