Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 116 3e-21
seq4810 102 7e-17
seq4863 96.9 3e-15
>seq4644
Length=1132839
Score = 116 bits (128), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| |||||| || |||||||| || |||||||||||||
Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||||| || ||||| || | || | ||||| || || |||
Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | |||||| ||||||
Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| ||||||||| ||||||||||| || || ||||| |||||||||
Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307
Score = 105 bits (116), Expect = 5e-18
Identities = 184/266 (69%), Gaps = 4/266 (2%)
Strand=Plus/Minus
Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCC-GCATTTACCCTCCTCGTAGCCTCAGTACCA 16730
||||||| |||||| || || |||| | ||| ||||| || || | || ||||
Sbjct 752797 TTTATTTGGAAATGTGTTCAGCTTAAGCCTGGATT---CCTCCGCGGAGACGGAGCACCA 752741
Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATT 16790
|| || || |||||||| || ||||||||||||| | ||| ||||||||| |
Sbjct 752740 AGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCT 752681
Query 16791 GTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT 16850
| ||||| || | || | ||||| || || || | ||||| ||||| ||||
Sbjct 752680 GCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTT 752621
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|||||| | | | |||||| |||||| ||||| |||||||| ||||| |
Sbjct 752620 TGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAG 752561
Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936
|||| || || ||||| |||||||||
Sbjct 752560 TCAGGGTCTTCACAAAGATCTGCATT 752535
Score = 102 bits (112), Expect = 7e-17
Identities = 163/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || |||||||| || ||||||||||| |
Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||||| || ||||| || |||| || ||||| || || |||
Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | |||||| ||||||
Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 751901
Query 16887 TTTCCACGGTGATGGTTTTTCCG-GTCAGCGTTTTGACAAAAATCTGCATT 16936
||||| |||||||| |||||| || || || || ||||| |||||||||
Sbjct 751900 CTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || ||||||||||| || |||||||||||||
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| || | || | ||||| || || |||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | |||||| ||||||
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| ||||||||| |||||||| || || || || || |||||||||
Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || ||||||||||| || |||||||||||||
Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||||| || ||||| || | || | ||||| || || |||
Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | ||||| || ||
Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937
|||| ||||||||| ||||| |||| ||||| ||||| ||||||||||
Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621
>seq4810
Length=1195048
Score = 102 bits (112), Expect = 7e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||| ||||||||||| || |||||||| |||| |
Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||||| || || || ||| | || || ||||| ||||| ||
Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | |||||| ||||||
Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGGAGGGCTCGA 316809
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || |||| || ||||| || ||||||||
Sbjct 316808 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | ||| |||| || || ||||||||||| || |||||||| |||| |
Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||||| || || || ||| | || || ||||| ||||| ||
Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | |||||| ||||||
Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATTGTGTCGGAGGGCTCGA 316353
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || || ||||||| || ||||| || || ||||| |||
Sbjct 316352 CCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTTG 316300
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | ||| |||| || || || |||||||| || ||||||||||| |
Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||||| || || || ||| | || || ||||| ||||| ||
Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | || ||| ||||||
Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTATCGGAGGGCTCGA 316581
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || ||||||| || ||||| || ||||||||
Sbjct 316580 CCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
>seq4863
Length=1240122
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || |||||||| || ||||||||||||| || || | | |||
Sbjct 1064090 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1064031
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || || ||||| || || || | |||||| |||||
Sbjct 1064030 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1063971
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||| |||||| |||| ||||||||
Sbjct 1063970 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGG 1063913
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || ||||| || ||||| || || ||||||||
Sbjct 1063912 TCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405062618831590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |