Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 316 3e-81
>seq4765
Length=3541379
Score = 316 bits (350), Expect = 3e-81
Identities = 1212/1888 (64%), Gaps = 44/1888 (2%)
Strand=Plus/Minus
Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899
|||||| | ||||| || |||| | || || || ||||| || || || ||||| ||
Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742
Query 61900 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958
||||| || || || || ||| |||||| || || || || ||| ||| | |
Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683
Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018
| || || | ||| || || | |||||||| |||||||| || || || | ||||| |
Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623
Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62077
||||||| || | | || | || ||||||| || || || | |||| || |
Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564
Query 62078 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134
| | |||| | | | ||||||| || || |||| | || ||| |||||
Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504
Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194
|| ||||||| ||| || | ||| |||| | | | | || || | || || ||
Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444
Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254
|| ||||| || || | || | || || || ||||| |||| ||||| || | ||
Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384
Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314
|| || || |||| || || ||||| ||||| || ||||| || ||||| | | |
Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324
Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374
||||||| |||| | | |||| || || || | |||| | ||| || | ||
Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264
Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62434
||||| || || || || || || || || | ||
Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204
Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494
|| || || || ||||| || || ||||||||||| || || | || || |||||
Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144
Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTT 62554
|| ||||| ||||||| | ||| || ||| ||| ||| || | || | |
Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084
Query 62555 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614
| ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| ||
Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024
Query 62615 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62672
|| || |||| || || || | |||||||| || || || ||||| || || ||||
Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966
Query 62673 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCA 62725
| || | | ||| || |||||||| || |||||| | ||| |
Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCG 3009906
Query 62726 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62785
|| ||||||||||| | || | || ||||| || || ||||| | ||| | |
Sbjct 3009905 TC----ACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGC 3009850
Query 62786 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 62845
| || | | || || ||||| ||||| || ||||||||||| || | ||| ||
Sbjct 3009849 GAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGC 3009790
Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905
||||| ||||| |||| ||||||||||| | || ||| | ||| | ||||| || | |
Sbjct 3009789 TGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACC 3009730
Query 62906 TGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCT 62963
|| | || || || || ||| | | ||| ||||||| | | | |||| | |
Sbjct 3009729 TGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG-----CC 3009676
Query 62964 TTTCTCTT----TCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017
|||| || |||||| | ||| | || || |||||||| ||||| |||| |
Sbjct 3009675 TTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCT 3009618
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
||| || ||||| | | ||| ||||| | ||||| | | | | ||| || || |
Sbjct 3009617 GCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCT 3009558
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63136
||||||||||||| || ||||| || || ||| |||||||| | | | || |||||
Sbjct 3009557 TCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499
Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196
|| || || |||||||| || || | |||| | | | ||| || ||||| || |||||
Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439
Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256
|| ||||| | | || ||||| ||| || ||||| || | ||| | ||| ||
Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379
Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316
|| | |||| || ||| |||| | |||||||| || ||||| || || | || |
Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319
Query 63317 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374
| || ||||||| || | | ||| || || || || || ||| || ||||
Sbjct 3009318 GTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGA 3009261
Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434
| | || || ||| | || | | | ||||| || || ||| ||||| | |
Sbjct 3009260 TCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCA 3009201
Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494
| || || ||| || | || | || | || | || || | ||| || || |
Sbjct 3009200 GGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGG 3009141
Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554
|||| || || | || || | | |||||| ||||| | ||| | || || ||
Sbjct 3009140 CGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTT 3009081
Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614
||| ||||| | || || ||||| | ||||||||| || | || | |||||
Sbjct 3009080 CACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTAC 3009021
Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674
|||| | |||| ||| || || |||| || || |||||||| || || || ||
Sbjct 3009020 CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAA 3008961
Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTT 63702
|||| || |||||||| || ||||||
Sbjct 3008960 AGTCGCGATCGTAAATTATGGACGAGTT 3008933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633591281223600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |