Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4765 316 3e-81 >seq4765 Length=3541379 Score = 316 bits (350), Expect = 3e-81 Identities = 1212/1888 (64%), Gaps = 44/1888 (2%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 |||||| | ||||| || |||| | || || || ||||| || || || ||||| || Sbjct 3010801 CTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCC 3010742 Query 61900 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 ||||| || || || || ||| |||||| || || || || ||| ||| | | Sbjct 3010741 GGTTTTAAGGCC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGG 3010683 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | || || | ||| || || | |||||||| |||||||| || || || | ||||| | Sbjct 3010682 GCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGG 3010623 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62077 ||||||| || | | || | || ||||||| || || || | |||| || | Sbjct 3010622 CCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCG-AACA 3010564 Query 62078 TCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 | | |||| | | | ||||||| || || |||| | || ||| ||||| Sbjct 3010563 TTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTC 3010504 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || ||||||| ||| || | ||| |||| | | | | || || | || || || Sbjct 3010503 ATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACC 3010444 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || ||||| || || | || | || || || ||||| |||| ||||| || | || Sbjct 3010443 TGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGAT 3010384 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || || |||| || || ||||| ||||| || ||||| || ||||| | | | Sbjct 3010383 TCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAG 3010324 Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 ||||||| |||| | | |||| || || || | |||| | ||| || | || Sbjct 3010323 TTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62434 ||||| || || || || || || || || | || Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || || || || ||||| || || ||||||||||| || || | || || ||||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 62495 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTT 62554 || ||||| ||||||| | ||| || ||| ||| ||| || | || | | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084 Query 62555 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 | ||||| || || || || | ||| ||||| ||||| || || || | ||| ||| || Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024 Query 62615 TTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62672 || || |||| || || || | |||||||| || || || ||||| || || |||| Sbjct 3010023 TTCGA--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGAT 3009966 Query 62673 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCA 62725 | || | | ||| || |||||||| || |||||| | ||| | Sbjct 3009965 TCTTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCG 3009906 Query 62726 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62785 || ||||||||||| | || | || ||||| || || ||||| | ||| | | Sbjct 3009905 TC----ACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGC 3009850 Query 62786 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 62845 | || | | || || ||||| ||||| || ||||||||||| || | ||| || Sbjct 3009849 GAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGC 3009790 Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 ||||| ||||| |||| ||||||||||| | || ||| | ||| | ||||| || | | Sbjct 3009789 TGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACC 3009730 Query 62906 TGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCT 62963 || | || || || || ||| | | ||| ||||||| | | | |||| | | Sbjct 3009729 TGCGCCTCGATGATGGCGAACCACAGGGACT-GAGCCTTAACTGTCCGATTGG-----CC 3009676 Query 62964 TTTCTCTT----TCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017 |||| || |||||| | ||| | || || |||||||| ||||| |||| | Sbjct 3009675 TTTCCCTCGGCCTCGTATTTAAGGTACAGCTTC--TCAAACTCGTCGCCCCACACATCCT 3009618 Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 ||| || ||||| | | ||| ||||| | ||||| | | | | ||| || || | Sbjct 3009617 GCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCT 3009558 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63136 ||||||||||||| || ||||| || || ||| |||||||| | | | || ||||| Sbjct 3009557 TCATAAAGAGATCGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || || |||||||| || || | |||| | | | ||| || ||||| || ||||| Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || ||||| | | || ||||| ||| || ||||| || | ||| | ||| || Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || | |||| || ||| |||| | |||||||| || ||||| || || | || | Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319 Query 63317 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374 | || ||||||| || | | ||| || || || || || ||| || |||| Sbjct 3009318 GTGCCCTTGGCACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAGA 3009261 Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | | || || ||| | || | | | ||||| || || ||| ||||| | | Sbjct 3009260 TCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCA 3009201 Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 | || || ||| || | || | || | || | || || | ||| || || | Sbjct 3009200 GGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGG 3009141 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 |||| || || | || || | | |||||| ||||| | ||| | || || || Sbjct 3009140 CGTGTGTGAAGAAGCGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTT 3009081 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 ||| ||||| | || || ||||| | ||||||||| || | || | ||||| Sbjct 3009080 CACCATGGATTCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTAC 3009021 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 |||| | |||| ||| || || |||| || || |||||||| || || || || Sbjct 3009020 CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAA 3008961 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTT 63702 |||| || |||||||| || |||||| Sbjct 3008960 AGTCGCGATCGTAAATTATGGACGAGTT 3008933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633591281223600