Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4764 156 4e-33
seq4810 107 2e-18
seq4863 100 2e-16
seq4765 91.5 1e-13
>seq4764
Length=1750656
Score = 156 bits (172), Expect = 4e-33
Identities = 212/296 (72%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041
||||| |||||| ||| |||||| ||| ||||| |||| || | || || ||
Sbjct 341868 CACGTCAAACTTGCGCCGACAGCCTTGGTAATTCATGTACCGAATCTTACCGAAGATGGC 341809
Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101
|| || || | | | ||||| || |||| || |||||||| |||||||||||
Sbjct 341808 CCGCTCCTTCCAGCCCATATCGTGGACGCCGCCGATGGACCACATGCAACCCACATAGCC 341749
Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161
||| |||||||| || |||| |||||| | ||||| || | ||||| || | | ||
Sbjct 341748 GTTGGGATCGCGCCCGTCCAGGCTGTACTTGTCGTTCAGCAGGATGGCGTACTCGAGCGC 341689
Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221
| || | | || |||| || | || |||||||||||||||||||||| | ||||
Sbjct 341688 CTGCTCCGGCGTGGGGCTCCACTCGAGGATCTTCTTGGCCCAGTACATGCGCAAGAAACC 341629
Query 51222 GTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
||||| |||||||||| | |||||| ||| |||| |||||||| |||||||
Sbjct 341628 ATGCATTTTGCCCTCGCGAACCAGCTGCAGTTGCGCCGCGTTCCACAGGTCGTCGT 341573
>seq4810
Length=1195048
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||||||||||| || | ||||| | || || ||| | ||
Sbjct 316304 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTCC 316363
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 316364 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316423
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || |||||||| || || | || || | ||||| || |||||||||
Sbjct 316424 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAAC 316483
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || || || ||
Sbjct 316484 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCT 316515
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || ||||||| | || || ||| | ||
Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 316820 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316879
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || |||||||| || || | || || | ||||| || |||||||||
Sbjct 316880 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAC 316939
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| | ||||| || ||
Sbjct 316940 ATCCAGAAGGAGTCCACTTTGCATTTGGTCCT 316971
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || ||||||| | || || ||| | ||
Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || ||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 316592 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316651
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || |||||||| || || | || |||| ||||||| | || |||||
Sbjct 316652 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAAC 316711
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 316712 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 316743
>seq4863
Length=1240122
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || || || || || | ||||| || ||||||| | || |||||| |
Sbjct 1063876 ACCATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCT 1063935
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| |||||| | ||| || ||| ||||| || || ||||| || ||
Sbjct 1063936 TCGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 1063995
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||||||||| || | || |||| |||||| || ||| |||
Sbjct 1063996 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 1064055
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || |||||
Sbjct 1064056 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCT 1064090
>seq4765
Length=3541379
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || ||||
Sbjct 2921626 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2921567
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 2921566 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 2921511
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || ||||| ||||| || | ||||||| ||||| | || ||
Sbjct 2921510 TCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 2921451
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || || || | || || |||||
Sbjct 2921450 TAACATTCAGAAGGAGTCTACCTTGCACTTGGTGCT 2921415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433300849427915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |