Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4764 156 4e-33 seq4810 107 2e-18 seq4863 100 2e-16 seq4765 91.5 1e-13 >seq4764 Length=1750656 Score = 156 bits (172), Expect = 4e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| |||||| ||| |||||| ||| ||||| |||| || | || || || Sbjct 341868 CACGTCAAACTTGCGCCGACAGCCTTGGTAATTCATGTACCGAATCTTACCGAAGATGGC 341809 Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | | | ||||| || |||| || |||||||| ||||||||||| Sbjct 341808 CCGCTCCTTCCAGCCCATATCGTGGACGCCGCCGATGGACCACATGCAACCCACATAGCC 341749 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 ||| |||||||| || |||| |||||| | ||||| || | ||||| || | | || Sbjct 341748 GTTGGGATCGCGCCCGTCCAGGCTGTACTTGTCGTTCAGCAGGATGGCGTACTCGAGCGC 341689 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | || |||| || | || |||||||||||||||||||||| | |||| Sbjct 341688 CTGCTCCGGCGTGGGGCTCCACTCGAGGATCTTCTTGGCCCAGTACATGCGCAAGAAACC 341629 Query 51222 GTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 ||||| |||||||||| | |||||| ||| |||| |||||||| ||||||| Sbjct 341628 ATGCATTTTGCCCTCGCGAACCAGCTGCAGTTGCGCCGCGTTCCACAGGTCGTCGT 341573 >seq4810 Length=1195048 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || | ||||| | || || ||| | || Sbjct 316304 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTCC 316363 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 316364 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316423 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || || | ||||| || ||||||||| Sbjct 316424 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAAC 316483 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 316484 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCT 316515 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 316820 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316879 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || || | ||||| || ||||||||| Sbjct 316880 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAC 316939 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| | ||||| || || Sbjct 316940 ATCCAGAAGGAGTCCACTTTGCATTTGGTCCT 316971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | || || ||| | || Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 316592 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 316651 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || |||| ||||||| | || ||||| Sbjct 316652 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAAC 316711 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 316712 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 316743 >seq4863 Length=1240122 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | ||||| || ||||||| | || |||||| | Sbjct 1063876 ACCATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCT 1063935 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| | ||| || ||| ||||| || || ||||| || || Sbjct 1063936 TCGGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 1063995 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||| || | || |||| |||||| || ||| ||| Sbjct 1063996 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 1064055 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || ||||| Sbjct 1064056 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCT 1064090 >seq4765 Length=3541379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 2921626 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2921567 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 2921566 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 2921511 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||| ||||| || | ||||||| ||||| | || || Sbjct 2921510 TCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 2921451 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || | || || ||||| Sbjct 2921450 TAACATTCAGAAGGAGTCTACCTTGCACTTGGTGCT 2921415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433300849427915