Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 226 3e-54
seq4768 118 1e-21
seq5068 109 6e-19
>seq4678
Length=1229792
Score = 226 bits (250), Expect = 3e-54
Identities = 549/825 (67%), Gaps = 10/825 (1%)
Strand=Plus/Plus
Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865
|| || || || || || || |||||||| || ||||| || |||| || ||| | |
Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179
Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923
| | ||| |||||||||| ||| || |||| | || || |||| || |
Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
| ||| || ||||| || |||||||| ||||||| ||||| ||||| || | |||
Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299
Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043
|| || || || ||||| | ||| || | ||| || | || || || | ||| ||
Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359
Query 93044 ATTA--CTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC-GCAAA 93099
|| | | || | | ||| | | | || | || | | |||| | |||| |||||
Sbjct 1146360 ATGATGCGCTCGCGCCTCGGTCGCT---GCACCAGATGCTGGAACATCA-GCACCGCAAA 1146415
Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159
||| || | ||| || || || || |||| ||||||| ||| || ||||| || |
Sbjct 1146416 GTCACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCAT 1146475
Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219
||| || || ||||| ||||| || || || ||||| || || || || || || ||
Sbjct 1146476 CAGGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTC 1146535
Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279
||||| ||||| || | || || || |||| || || || || ||||||
Sbjct 1146536 GACGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGA 1146595
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
| ||||| || || || ||| | || | || || || || || || || ||
Sbjct 1146596 CAGGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATA 1146655
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|| |||| || | || || ||||| || ||||| | || | ||||| || |||||
Sbjct 1146656 TTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 1146715
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| |||||||| || || ||||| || || || || | || || |||||||| || ||
Sbjct 1146716 CACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTC 1146775
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|| ||| | ||| || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 1146776 CTGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGC 1146835
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579
|| | ||| || || || || ||||| ||||| || ||| |||| |||||
Sbjct 1146836 CAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATC 1146895
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || | || || ||||| || ||||| || || || || ||
Sbjct 1146896 CTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGC 1146940
>seq4768
Length=2945258
Score = 118 bits (130), Expect = 1e-21
Identities = 79/87 (91%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 534058 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 534117
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||||||||
Sbjct 534118 GTGGGTTCGAACCCCACACCTGACAAA 534144
>seq5068
Length=653817
Score = 109 bits (120), Expect = 6e-19
Identities = 91/108 (84%), Gaps = 5/108 (5%)
Strand=Plus/Plus
Query 126247 TTTTGCGCTTCTATTTACA--GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA 126304
|||| | ||||| || ||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 348904 TTTTTCACTTCT-TTCACATAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGC 348962
Query 126305 TCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350
|||||||| | | |||||||||||||||||||||||||| || ||
Sbjct 348963 TCTGGTTCTCGTGAGAGAGCGTGGGTTCGAACCCCACACCTGGCAGAT 349010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556825014732840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |