Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4678 226 3e-54 seq4768 118 1e-21 seq5068 109 6e-19 >seq4678 Length=1229792 Score = 226 bits (250), Expect = 3e-54 Identities = 549/825 (67%), Gaps = 10/825 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 || || || || || || || |||||||| || ||||| || |||| || ||| | | Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| |||||||||| ||| || |||| | || || |||| || | Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | ||| || ||||| || |||||||| ||||||| ||||| ||||| || | ||| Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359 Query 93044 ATTA--CTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC-GCAAA 93099 || | | || | | ||| | | | || | || | | |||| | |||| ||||| Sbjct 1146360 ATGATGCGCTCGCGCCTCGGTCGCT---GCACCAGATGCTGGAACATCA-GCACCGCAAA 1146415 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 ||| || | ||| || || || || |||| ||||||| ||| || ||||| || | Sbjct 1146416 GTCACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCAT 1146475 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || || ||||| ||||| || || || ||||| || || || || || || || Sbjct 1146476 CAGGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTC 1146535 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 ||||| ||||| || | || || || |||| || || || || |||||| Sbjct 1146536 GACGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGA 1146595 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| || || || ||| | || | || || || || || || || || Sbjct 1146596 CAGGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATA 1146655 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || |||| || | || || ||||| || ||||| | || | ||||| || ||||| Sbjct 1146656 TTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 1146715 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || || ||||| || || || || | || || |||||||| || || Sbjct 1146716 CACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTC 1146775 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || ||| | ||| || ||||| || ||||| ||||||||||| || ||||| || || Sbjct 1146776 CTGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGC 1146835 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 || | ||| || || || || ||||| ||||| || ||| |||| ||||| Sbjct 1146836 CAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGAGATC 1146895 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || | || || ||||| || ||||| || || || || || Sbjct 1146896 CTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGC 1146940 >seq4768 Length=2945258 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 534058 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 534117 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 534118 GTGGGTTCGAACCCCACACCTGACAAA 534144 >seq5068 Length=653817 Score = 109 bits (120), Expect = 6e-19 Identities = 91/108 (84%), Gaps = 5/108 (5%) Strand=Plus/Plus Query 126247 TTTTGCGCTTCTATTTACA--GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA 126304 |||| | ||||| || ||| | ||||||||||||| |||||||||||||||||||||| Sbjct 348904 TTTTTCACTTCT-TTCACATAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGC 348962 Query 126305 TCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| | | |||||||||||||||||||||||||| || || Sbjct 348963 TCTGGTTCTCGTGAGAGAGCGTGGGTTCGAACCCCACACCTGGCAGAT 349010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556825014732840