Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5107 91.5 3e-13 seq4923 91.5 3e-13 seq4779 89.7 1e-12 seq4679 89.7 1e-12 seq4676 89.7 1e-12 seq4701 84.2 4e-11 >seq5107 Length=704657 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 141807 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 141748 Query 142561 AGCCCCACATCGGGCAGAAG 142580 |||||||| | |||| |||| Sbjct 141747 AGCCCCACGTTGGGC-GAAG 141729 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 156155 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 156214 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 156215 CCCCACGTTGGGC 156227 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 156696 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 156637 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 156636 AGCCCCACGTTGGGC 156622 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 157522 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 157581 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 157582 CCCCACGTTGGGC 157594 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 177235 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 177294 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 177295 CCCACGTTGGGC-GAAG 177310 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 150982 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 151041 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 151042 CCCACGTTGGGC 151053 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 157955 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 158014 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 158015 CCCACGTTGGGC 158026 >seq4923 Length=252927 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 155018 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 154959 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 154958 CCCACGTTGGGCGAAAGT 154941 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 155861 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 155802 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 155801 CCCACGTTGGGCGGA 155787 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 155416 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 155357 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 155356 CCCACGTTGGGC 155345 >seq4779 Length=3018021 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2081131 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2081190 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2081191 CCCACGTTGGGC 2081202 >seq4679 Length=685389 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 71561 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 71502 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 71501 CCCCGCAAGGGA 71490 >seq4676 Length=1384158 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1065976 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1066035 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1066036 CCCACGTTGGGC 1066047 >seq4701 Length=1035974 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCC 142114 |||| | ||||| |||| ||||||||||||||||||||||||||| |||||||||| || Sbjct 175539 CTCTTTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTGGCGGGTTCGATTCC 175598 Query 142115 CGCCAG 142120 ||| || Sbjct 175599 CGCAAG 175604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027769097353581