Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4644 176 8e-39 seq4863 170 4e-37 seq4810 170 4e-37 seq4765 161 2e-34 seq4564 127 4e-24 >seq4644 Length=1132839 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | |||||||| || |||||||| || |||||||| || |||| Sbjct 752308 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 752249 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || ||||| | |||||| || ||||| || | | || || || || | Sbjct 752248 AGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAG 752189 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| || ||||| ||||| || ||| |||||||| | || || | Sbjct 752188 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | |||||||| || |||||||| || |||||||| || |||| Sbjct 751851 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 751792 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| |||||||| || | | || || || || | Sbjct 751791 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 751732 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| || ||||| ||||| || ||| |||||||| | | ||| | Sbjct 751731 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||||||||| ||||| || | ||| || || || ||||||||| Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATT 751622 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | ||||| || || || ||||| || |||||||| || |||| Sbjct 752536 TTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 752477 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| |||||||| || | | || || || || | Sbjct 752476 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 752417 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| || ||||| ||||| || ||| |||||||| | || || | Sbjct 752416 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||||||||| ||||| || |||||||| || || ||||||||| Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | |||||||| || || ||||| || |||||||| || |||| Sbjct 752764 TTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 752705 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| |||||||| || | | || || || || | Sbjct 752704 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 752645 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||||||||| || || ||||| || ||| |||||||| | || || | Sbjct 752644 GTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752585 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| |||||||| ||||| || |||||||| || || ||||||||| Sbjct 752584 CTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535 >seq4863 Length=1240122 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 1064105 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1064046 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || || || || ||| Sbjct 1064045 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 1063986 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | | || || Sbjct 1063985 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 1063926 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||| || ||||| |||||||| Sbjct 1063925 TCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4810 Length=1195048 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| |||||||| || || ||||| || |||||||| || || ||| Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || ||| Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||| ||||| || | | || || Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | ||||||||||| |||||||| Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| |||||||| || |||||||| || |||||||| |||||||| Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || ||| Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| |||||| ||||| | | || || Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACC 316351 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || | ||||||||||| || ||||| Sbjct 316350 TCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || | |||||||| || |||||||| |||||||| Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| ||||| || || || | || ||||| || ||| Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| |||||||||||| | | || || Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACC 316807 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | ||||||||||| |||||||| Sbjct 316806 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 >seq4765 Length=3541379 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| | || ||||| || || |||||||| || ||| Sbjct 2921400 CCACCACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAG 2921459 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || | || || || || ||| Sbjct 2921460 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGA 2921519 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| ||||| ||||| | | ||| || Sbjct 2921520 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 2921579 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 2921580 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626 >seq4564 Length=637309 Score = 127 bits (140), Expect = 4e-24 Identities = 170/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| ||||||| || || || ||||| | ||||| |||||||||||||| | Sbjct 89155 CTGCAGCATCATCCACATGGCCTCCACGTAGTCGCTGGCATGCCCCCAATCGCGCTTCGA 89214 Query 268306 GTCCATGTTCCCGAGGAACAGGCATT---TCTGCTTGCCGAGCTTCACGCGTGCAAGACC 268362 ||||| || || || | | | | ||||||| || || | || | || Sbjct 89215 GTCCAGATTGCCCAGCTCAAAGTACTCCATCTGCTTCAACAGAATCTTG---GCCACACT 89271 Query 268363 GCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 | |||||||| || || || || ||||||||||| | || ||||||||||||||||| Sbjct 89272 TCTGGTGATTTTCCGTGTAACAAAGTTCTCGCCACGTCGCGGACTCTCGTGGTTGAAGAG 89331 Query 268423 GATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAG 268477 ||| |||||||| ||| ||||| || ||||| |||||||| | ||| ||||| Sbjct 89332 GATCCCGTTGCAGGCGTACATGTTGTAGGCCTCTCGGTAGTTGATGACGATCCAG 89386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921563174240520