Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4765 464 1e-125 seq4678 269 5e-67 >seq4765 Length=3541379 Score = 464 bits (514), Expect = 1e-125 Identities = 1170/1755 (67%), Gaps = 64/1755 (4%) Strand=Plus/Minus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 ||||| || || ||||| |||| || | | || ||||||||||| | ||| | Sbjct 3010666 GTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGA 3010607 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG-TGCTCGGGGAACCCTT 243995 ||| ||| ||||| | |||||||||| | | | || | || ||| | | | Sbjct 3010606 TTTCACAGAGATCTCCCAAACCGTCTTGTACA-GATCGCGAACATTCTGGGGAATGGCCT 3010548 Query 243996 CGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 |||| ||||| | ||||| | |||| |||| |||| | ||||| ||| | |||| Sbjct 3010547 CGATATTCTGGATAGAGCCACGGCTGGAA-ATGATCTGGTTCTTCATGTCATCATCCCAC 3010489 Query 244055 AGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCC 244111 | | ||| |||| || || | ||||| ||| |||||||| || || || Sbjct 3010488 AAGTCCA---GCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCG 3010432 Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171 || || |||||||| |||| || || || |||||||| | || |||||||| Sbjct 3010431 GAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCC 3010372 Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231 | |||||| || ||| || || |||||||| | ||| |||||| ||| || |||||| Sbjct 3010371 ATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCG 3010312 Query 244232 TGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289 || ||| ||| || || | |||| ||||||||| | | || | | ||| | Sbjct 3010311 TGTTTCTTGATC--GATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGT 3010254 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 |||||||||| |||| || | |||||||| ||||||||||||||||||| Sbjct 3010253 ---------CCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGG 3010203 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409 | || || || ||| ||||||||| | ||| || | || ||||| | || || | Sbjct 3010202 TTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATA 3010143 Query 244410 TGGTCTCGAAGATCATCTTG-TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 | || || |||||| | ||| |||| | | |||| ||| | |||||| | | Sbjct 3010142 TCGTTTCAAAGATC-TGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 |||| || ||| | ||||| |||||||| ||||| ||||| ||||| | || | | | Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || || | |||| || |||| ||| ||| ||||| ||| || | |||||| || || Sbjct 3010023 TTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTC 3009964 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 || | | | ||| || |||| || ||| |||||| | | ||| Sbjct 3009963 TTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTAC------GTCTTTTCG 3009910 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 | | |||||||| |||||| |||| | ||||||||||||||||| | | Sbjct 3009909 GG---------CGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATC 3009859 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | || ||||| ||| || || ||||| || || |||||||||||||||||| Sbjct 3009858 TCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCC 3009799 Query 244769 AGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828 | | ||| |||||| ||| |||||| || |||||| |||||||| | || || Sbjct 3009798 ACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCA 3009739 Query 244829 GTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGA 244888 ||||| | ||| || ||| || | | ||| ||| | |||||| || |||| Sbjct 3009738 GTCTCCACCTGCGCCTCGATGATGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTG 3009679 Query 244889 GCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCG 244948 ||||| ||||| |||||||| |||||| ||| |||||| |||||| || || Sbjct 3009678 GCCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCC 3009619 Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008 | |||||||| ||| ||||||||| || ||| | | ||| ||| | | Sbjct 3009618 TGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGC 3009559 Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCC 245068 | ||| ||||| ||||| ||||||||||| | ||| || || | | | | ||| ||| Sbjct 3009558 TTCATAAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499 Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128 ||| |||||||| |||| ||||| || || ||||| || |||||||||||||| Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439 Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCG 245188 |||| || | ||| |||||||||||| ||| ||||||||||| || | | | Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379 Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 ||||||| ||||| | || || | ||| || ||| ||| || ||||| ||| | Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319 Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGA 245304 | ||||||| | | || ||| |||||||| ||| | ||||| || |||||| Sbjct 3009318 GTGCCCTTGGCAC---GGATGC-AATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGA 3009263 Query 245305 GATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTT 245364 ||| | ||| ||| | | | | ||||| || || ||||| ||||| | Sbjct 3009262 GATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGT 3009203 Query 245365 GAGCAGAAAGCAGGAGGACAGCTGGGGC---TTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 || || |||||||| || ||||| ||| || | | ||| | | |||||| ||||| Sbjct 3009202 CAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTG--GCA-GCGGCGAACAGGGTGGG 3009146 Query 245422 GCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAG-AGCGTCG 245479 |||||| || ||| ||| |||| || | || ||| |||| | ||| || ||| Sbjct 3009145 CGAGGCGTGTGTGAAGAAGC-GCTCTGACAACAAATTGTATGTCTCCA-CAGCGGCATCG 3009088 Query 245480 ATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCG-- 245536 |||| || || ||||| | || ||| | ||| || ||||||| ||| |||| Sbjct 3009087 ATGTCTTCACCATGGAT-TCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGC 3009029 Query 245537 ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTAC 245596 | | | || || ||| |||| || || ||||| || |||||||| |||||||| Sbjct 3009028 AATCTTAC--CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAA 3008971 Query 245597 GAGTAGCCAAAGTCG 245611 || ||||||||| Sbjct 3008970 TTATACCCAAAGTCG 3008956 >seq4678 Length=1229792 Score = 269 bits (298), Expect = 5e-67 Identities = 501/729 (69%), Gaps = 15/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||||||||| |||||||| || || || ||||| ||||| |||| | || | Sbjct 1146838 CTGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGC 1146779 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | ||||| |||||||| || ||||||||||| ||||| |||||| Sbjct 1146778 CAGGAGGTACAGATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAAC 1146719 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| || ||| ||||| ||| || |||| ||||| | ||| || | |||| Sbjct 1146718 GTGCATTCGGAGATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG 1146659 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||||| ||||| ||||| ||||| | ||| ||||| |||||||| Sbjct 1146658 GAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCC 1146599 Query 42663 CTCAACTGGATCGAGAGTCC-CGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||||||| ||| | || |||| || || ||| | | | || ||| || Sbjct 1146598 CTGTCCTGGATC--TCTTCCAAGTCGGCCAAC-TTTGGGGAGCGCATCATTGCGTTTGCC 1146542 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 |||||||||||||| |||||| ||| ||| |||||||| |||||||| ||| || Sbjct 1146541 GCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGC 1146482 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | |||||| || | |||||||| || || || ||| | | || ||||| ||||| Sbjct 1146481 GGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCAC 1146422 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG---GAG 42896 | |||||||| || ||||| | || || || ||| ||| | ||| Sbjct 1146421 TGTGACTTTGCGGTGCTGATGTTCCAG---CATCTGGTGC---AGCGACCGAGGCGCGAG 1146368 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | |||||| || || ||||| || ||| ||||||||||||| | | Sbjct 1146367 CGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCC 1146308 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 ||||| || ||| ||||||||||| ||||| |||| ||||||| ||| || Sbjct 1146307 CTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTG 1146248 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||| | ||| ||| | || |||| | | |||||||||| | || ||| Sbjct 1146247 GCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTC 1146188 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||||| |||||| |||| |||||||||||||| || |||||| || | | Sbjct 1146187 AACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGC 1146128 Query 43137 GACTACCAG 43145 || || ||| Sbjct 1146127 GAGTATCAG 1146119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944278514402160