Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 464 1e-125
seq4678 269 5e-67
>seq4765
Length=3541379
Score = 464 bits (514), Expect = 1e-125
Identities = 1170/1755 (67%), Gaps = 64/1755 (4%)
Strand=Plus/Minus
Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936
||||| || || ||||| |||| || | | || ||||||||||| | ||| |
Sbjct 3010666 GTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGA 3010607
Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG-TGCTCGGGGAACCCTT 243995
||| ||| ||||| | |||||||||| | | | || | || ||| | | |
Sbjct 3010606 TTTCACAGAGATCTCCCAAACCGTCTTGTACA-GATCGCGAACATTCTGGGGAATGGCCT 3010548
Query 243996 CGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054
|||| ||||| | ||||| | |||| |||| |||| | ||||| ||| | ||||
Sbjct 3010547 CGATATTCTGGATAGAGCCACGGCTGGAA-ATGATCTGGTTCTTCATGTCATCATCCCAC 3010489
Query 244055 AGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCC 244111
| | ||| |||| || || | ||||| ||| |||||||| || || ||
Sbjct 3010488 AAGTCCA---GCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCG 3010432
Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171
|| || |||||||| |||| || || || |||||||| | || ||||||||
Sbjct 3010431 GAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCC 3010372
Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231
| |||||| || ||| || || |||||||| | ||| |||||| ||| || ||||||
Sbjct 3010371 ATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCG 3010312
Query 244232 TGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGC 244289
|| ||| ||| || || | |||| ||||||||| | | || | | ||| |
Sbjct 3010311 TGTTTCTTGATC--GATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGT 3010254
Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349
|||||||||| |||| || | |||||||| |||||||||||||||||||
Sbjct 3010253 ---------CCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGG 3010203
Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409
| || || || ||| ||||||||| | ||| || | || ||||| | || || |
Sbjct 3010202 TTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATA 3010143
Query 244410 TGGTCTCGAAGATCATCTTG-TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468
| || || |||||| | ||| |||| | | |||| ||| | |||||| | |
Sbjct 3010142 TCGTTTCAAAGATC-TGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084
Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528
|||| || ||| | ||||| |||||||| ||||| ||||| ||||| | || | | |
Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024
Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588
|| || | |||| || |||| ||| ||| ||||| ||| || | |||||| || ||
Sbjct 3010023 TTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTC 3009964
Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648
|| | | | ||| || |||| || ||| |||||| | | |||
Sbjct 3009963 TTGGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTAC------GTCTTTTCG 3009910
Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708
| | |||||||| |||||| |||| | ||||||||||||||||| | |
Sbjct 3009909 GG---------CGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATC 3009859
Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768
|| || | || ||||| ||| || || ||||| || || ||||||||||||||||||
Sbjct 3009858 TCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCC 3009799
Query 244769 AGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCG 244828
| | ||| |||||| ||| |||||| || |||||| |||||||| | || ||
Sbjct 3009798 ACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCA 3009739
Query 244829 GTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGA 244888
||||| | ||| || ||| || | | ||| ||| | |||||| || ||||
Sbjct 3009738 GTCTCCACCTGCGCCTCGATGATGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTG 3009679
Query 244889 GCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCG 244948
||||| ||||| |||||||| |||||| ||| |||||| |||||| || ||
Sbjct 3009678 GCCTTTCCCTCGGCCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCC 3009619
Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008
| |||||||| ||| ||||||||| || ||| | | ||| ||| | |
Sbjct 3009618 TGCAGGCCGGGACACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGC 3009559
Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCC 245068
| ||| ||||| ||||| ||||||||||| | ||| || || | | | | ||| |||
Sbjct 3009558 TTCATAAAGAGATCGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCC 3009499
Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128
||| |||||||| |||| ||||| || || ||||| || ||||||||||||||
Sbjct 3009498 TTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAA 3009439
Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCG 245188
|||| || | ||| |||||||||||| ||| ||||||||||| || | | |
Sbjct 3009438 TAGATGGCAAAGGCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTG 3009379
Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248
||||||| ||||| | || || | ||| || ||| ||| || ||||| ||| |
Sbjct 3009378 TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAA 3009319
Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGA 245304
| ||||||| | | || ||| |||||||| ||| | ||||| || ||||||
Sbjct 3009318 GTGCCCTTGGCAC---GGATGC-AATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGA 3009263
Query 245305 GATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTT 245364
||| | ||| ||| | | | | ||||| || || ||||| ||||| |
Sbjct 3009262 GATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGT 3009203
Query 245365 GAGCAGAAAGCAGGAGGACAGCTGGGGC---TTGGGGCTGCACGAGTTGAACAGAGTGGG 245421
|| || |||||||| || ||||| ||| || | | ||| | | |||||| |||||
Sbjct 3009202 CAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTG--GCA-GCGGCGAACAGGGTGGG 3009146
Query 245422 GCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAG-AGCGTCG 245479
|||||| || ||| ||| |||| || | || ||| |||| | ||| || |||
Sbjct 3009145 CGAGGCGTGTGTGAAGAAGC-GCTCTGACAACAAATTGTATGTCTCCA-CAGCGGCATCG 3009088
Query 245480 ATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCG-- 245536
|||| || || ||||| | || ||| | ||| || ||||||| ||| ||||
Sbjct 3009087 ATGTCTTCACCATGGAT-TCCAATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGC 3009029
Query 245537 ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTAC 245596
| | | || || ||| |||| || || ||||| || |||||||| ||||||||
Sbjct 3009028 AATCTTAC--CGTTTCTCTTCAGCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAA 3008971
Query 245597 GAGTAGCCAAAGTCG 245611
|| |||||||||
Sbjct 3008970 TTATACCCAAAGTCG 3008956
>seq4678
Length=1229792
Score = 269 bits (298), Expect = 5e-67
Identities = 501/729 (69%), Gaps = 15/729 (2%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
||||||||||| |||||||| || || || ||||| ||||| |||| | || |
Sbjct 1146838 CTGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGC 1146779
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
| ||||| ||| | ||||| |||||||| || ||||||||||| ||||| ||||||
Sbjct 1146778 CAGGAGGTACAGATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAAC 1146719
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
||||| || ||| ||||| ||| || |||| ||||| | ||| || | ||||
Sbjct 1146718 GTGCATTCGGAGATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGG 1146659
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| |||||||| ||||| ||||| ||||| | ||| ||||| ||||||||
Sbjct 1146658 GAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCC 1146599
Query 42663 CTCAACTGGATCGAGAGTCC-CGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719
|| ||||||| ||| | || |||| || || ||| | | | || ||| ||
Sbjct 1146598 CTGTCCTGGATC--TCTTCCAAGTCGGCCAAC-TTTGGGGAGCGCATCATTGCGTTTGCC 1146542
Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779
|||||||||||||| |||||| ||| ||| |||||||| |||||||| ||| ||
Sbjct 1146541 GCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGC 1146482
Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| |||||| || | |||||||| || || || ||| | | || ||||| |||||
Sbjct 1146481 GGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTGCAC 1146422
Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG---GAG 42896
| |||||||| || ||||| | || || || ||| ||| | |||
Sbjct 1146421 TGTGACTTTGCGGTGCTGATGTTCCAG---CATCTGGTGC---AGCGACCGAGGCGCGAG 1146368
Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956
|| || | |||||| || || ||||| || ||| ||||||||||||| | |
Sbjct 1146367 CGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCC 1146308
Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016
||||| || ||| ||||||||||| ||||| |||| ||||||| ||| ||
Sbjct 1146307 CTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTG 1146248
Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076
||||| | ||| ||| | || |||| | | |||||||||| | || |||
Sbjct 1146247 GCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTC 1146188
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
|||| ||||||| |||||| |||| |||||||||||||| || |||||| || | |
Sbjct 1146187 AACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGC 1146128
Query 43137 GACTACCAG 43145
|| || |||
Sbjct 1146127 GAGTATCAG 1146119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944278514402160
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