Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq4761 161 9e-35
>seq4761
Length=1439414
Score = 161 bits (178), Expect = 9e-35
Identities = 423/634 (67%), Gaps = 20/634 (3%)
Strand=Plus/Plus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194
||||| ||||| ||||||||| ||||||| | || || || | ||| || ||||
Sbjct 1350191 GGAAACGGACGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAG 1350250
Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254
| || || || |||| || |||| ||| || || || | ||||| || ||||| ||
Sbjct 1350251 ACATGAGCGTCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCT 1350310
Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314
| ||| | || | |||| || ||| ||||| || || || |||| |||||||||
Sbjct 1350311 ATCATGTGGGTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCA 1350370
Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACC---GTCA---GCTACATAAAATTGA 20368
| |||||| |||||||||||||| | ||| || ||| | ||| | || ||
Sbjct 1350371 GCGCTCCTCTGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGC 1350430
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428
| ||||||| ||||| ||||||||| | | ||| || ||||| || ||
Sbjct 1350431 GCCAGGCAGTGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGAC 1350490
Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGACAATTG 20487
|| ||||| | || || |||||| || ||||| || | | | ||| || ||
Sbjct 1350491 ATGATGATGCGCCTGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACG-CAGCTG 1350549
Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACG-TACGCCGCCCCAAAGTGCC 20546
||| | |||||||| | ||||| | || || || ||| | |||||||||||||
Sbjct 1350550 GTCGATGCCCTGGCCGCTGTAGTCGTCGTC-GCAGGTGCGATACTCTGCCCCAAAGTGCC 1350608
Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCC--CTCCCTTCTGTGCGCCAGGCCGCG 20604
||||||||| ||||| || || |||||||| || || || | | || |||| |
Sbjct 1350609 GCCACTGGAAGCCGTATACCGGGCCCAAATCTCCGACTGCC--CGCTCCGTGTGGCCCAG 1350666
Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTG--A 20661
| | ||||| ||||||||| || || |||||||| | || | | ||||
Sbjct 1350667 CTTGTCCAGGTACTCCCTGGTGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAG 1350726
Query 20662 AAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721
||||| ||| ||| || | || | ||||||||| ||||| | | ||| | ||
Sbjct 1350727 AAGCT---TGGCGTCCGTCTTACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCG 1350783
Query 20722 CCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755
| || || ||||| ||||| || | |||||||
Sbjct 1350784 GAAGAAGACACGCTTGGTGGTCAGCAGGGGAAAG 1350817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441344436280440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |