Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4761 161 9e-35 >seq4761 Length=1439414 Score = 161 bits (178), Expect = 9e-35 Identities = 423/634 (67%), Gaps = 20/634 (3%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||| ||||| ||||||||| ||||||| | || || || | ||| || |||| Sbjct 1350191 GGAAACGGACGCGGAGTGCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAG 1350250 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | || || || |||| || |||| ||| || || || | ||||| || ||||| || Sbjct 1350251 ACATGAGCGTCGCCCATGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCT 1350310 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | || | |||| || ||| ||||| || || || |||| ||||||||| Sbjct 1350311 ATCATGTGGGTAAGCAGGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCA 1350370 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACC---GTCA---GCTACATAAAATTGA 20368 | |||||| |||||||||||||| | ||| || ||| | ||| | || || Sbjct 1350371 GCGCTCCTCTGGTACAGCTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGC 1350430 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | ||||||| ||||| ||||||||| | | ||| || ||||| || || Sbjct 1350431 GCCAGGCAGTGACATGGCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGAC 1350490 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGACAATTG 20487 || ||||| | || || |||||| || ||||| || | | | ||| || || Sbjct 1350491 ATGATGATGCGCCTGTCCGACGGATTGTTCTTTATCGTCTCGATCACCTGACG-CAGCTG 1350549 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACG-TACGCCGCCCCAAAGTGCC 20546 ||| | |||||||| | ||||| | || || || ||| | ||||||||||||| Sbjct 1350550 GTCGATGCCCTGGCCGCTGTAGTCGTCGTC-GCAGGTGCGATACTCTGCCCCAAAGTGCC 1350608 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCC--CTCCCTTCTGTGCGCCAGGCCGCG 20604 ||||||||| ||||| || || |||||||| || || || | | || |||| | Sbjct 1350609 GCCACTGGAAGCCGTATACCGGGCCCAAATCTCCGACTGCC--CGCTCCGTGTGGCCCAG 1350666 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTG--A 20661 | | ||||| ||||||||| || || |||||||| | || | | |||| Sbjct 1350667 CTTGTCCAGGTACTCCCTGGTGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAG 1350726 Query 20662 AAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721 ||||| ||| ||| || | || | ||||||||| ||||| | | ||| | || Sbjct 1350727 AAGCT---TGGCGTCCGTCTTACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCG 1350783 Query 20722 CCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 | || || ||||| ||||| || | ||||||| Sbjct 1350784 GAAGAAGACACGCTTGGTGGTCAGCAGGGGAAAG 1350817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441344436280440