Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4764 147 2e-30 seq4969 93.3 3e-14 seq4810 91.5 1e-13 >seq4764 Length=1750656 Score = 147 bits (162), Expect = 2e-30 Identities = 210/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 ||||||||||||| ||| | ||||| || |||||||| || |||||| | |||||| Sbjct 341582 TGTGGAACGCGGCGCAACTGCAGCTGGTTCGCGAGGGCAAAATGCATGGTTTCTTGCGCA 341641 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957 |||| ||| |||||| || | || ||| | || | || | |||||| | || Sbjct 341642 TGTACTGGGCCAAGAAGATCCTCGAGTGGAGCCCC-ACGC-CGGAGCAGGCGCTCGAGTA 341699 Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017 |||||| || || || ||||||||| |||||||||| ||||||||||| || || || Sbjct 341700 CGCCATCCTGCTGAACGACAAGTACAGCCTGGACGGGCGCGATCCCAACGGCTATGTGGG 341759 Query 38018 CTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGG 38077 || ||||||| || |||| | ||||||| | |||| ||| |||| | ||| Sbjct 341760 TTGCATGTGGTCCATCGGCGGCGTCCACGATATGGGCTGGAAGGAGCGGGCCATCTTCGG 341819 Query 38078 CAAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAAC 38129 ||||||||||||||||| ||| | || ||| | |||||| | || ||| Sbjct 341820 TAAGATTCGGTACATGAATTACCAAGGCTGTCGGCGCAAGTTTGACGTGAAC 341871 >seq4969 Length=1161901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 209/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 39912 GAGCCGGTGTACGCGTCGGCCGGAGCCGCGGGCATGGACCTGAGGAGCGCATACGACTAC 39971 ||||||||| | || ||| || || ||| |||||||| | ||||| |||||| Sbjct 225827 GAGCCGGTGCGTGGATCCGCCAAGGCTGCCGGCGTGGACCTGCGCAGCGCCTACGACATT 225886 Query 39972 GTGATTCCTCGCAACGACCGAATGCTG--GTGAAGACGGACATTGCTCTACAACTACCCA 40029 ||| | || ||| ||| || || | |||||||| ||| | | || | ||| Sbjct 225887 GTGGTGCCG-GCA-CGAGGCAAGGCCGTTGTGAAGACCGACCTGCAGGTCCAGGTGCCCG 225944 Query 40030 AAGAGTGCTACGGTAGAATAGCGCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACA 40089 | | | |||||| | | || || || ||||| ||||| ||||| || |||||| Sbjct 225945 AGGGCTCCTACGGACGCGTGGCCCCACGCTCCGGTCTGGCCGTGAAGAACTTCATCGACG 226004 Query 40090 TTTCGGCCGGCGTCATAGATTCTGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACA 40149 | |||||||| | || |||||| |||||| ||||||| ||| || | ||| Sbjct 226005 TGGGAGCCGGCGTGGTGGACGAGGACTACCGTGGCAACCTGGGCGTCGTGCTGTTCAACC 226064 Query 40150 ACGGAGACGAGGCCTTTGTGGTGCTTCGAGGAGACCGCATCGCCCAGCTCATACTG-GAG 40208 || |||| || || | |||| || || ||||||||||||||| |||| ||| ||| Sbjct 226065 ACTCGGACGTGGAGTTCGAGGTGAAGCGCGGCGACCGCATCGCCCAGTTCAT-CTGCGAG 226123 Query 40209 CGAATCTT 40216 || ||||| Sbjct 226124 CGCATCTT 226131 >seq4810 Length=1195048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||| |||| ||||| ||| ||||||||| ||||||||||| | | Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| |||||||| ||||| |||||||| || || Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 316410 ATGCCCTCCTTGTCC 316396 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| |||| ||| | ||| ||||||||| ||||||||||| | | Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||| |||||||| ||||| |||||||| || || Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 316866 ATGCCCTCCTTGTCC 316852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397037521683082