Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4644 136 9e-27 seq4765 131 4e-25 seq4810 125 2e-23 seq4863 98.7 2e-15 >seq4644 Length=1132839 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| |||||||||||||| | || || || |||||| Sbjct 752270 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAG 752211 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| |||||||| || || |||||||| || || ||||| Sbjct 752210 ATCAAACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 752154 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || | ||||| ||||| ||||| |||||||| Sbjct 752153 TTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTC 752094 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 752093 ACGAAGATCTGCATT 752079 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||||||||| || | || || || |||||| Sbjct 752726 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 752667 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || ||||||| ||||| || || || |||||||| || ||||| Sbjct 752666 ATCAAACGCTGCTG---ATCTGGGGGTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACA 752610 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 752609 TTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTC 752550 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 752549 ACAAAGATCTGCATT 752535 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||||||||| || | || || || |||||| Sbjct 752498 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 752439 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| |||||||| || || |||||||| || || ||||| Sbjct 752438 ATCAAACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 752382 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || | ||||| ||||| |||||||| ||||| Sbjct 752381 TTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTC 752322 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 752321 ACAAAGATCTGCATT 752307 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||||||||| || | || || || |||||| Sbjct 751813 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 751754 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| |||||||| || || |||||||| || || ||||| Sbjct 751753 ATCAAACGCTGCTG---ATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 751697 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| || || | ||||| ||||| || |||| || || Sbjct 751696 TTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTC 751637 Query 288460 ACGAATATCTGCATTATG--TTATTCT 288484 || || ||||||||| | ||||||| Sbjct 751636 ACAAAGATCTGCATTTCGAATTATTCT 751610 >seq4765 Length=3541379 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || || ||| Sbjct 2921436 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 2921495 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||||||||| ||||| || || ||||| || Sbjct 2921496 ATCAGACGCTGCTG---ATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 2921552 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || || ||| || || || ||||| ||||| || || || ||||| Sbjct 2921553 TTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTC 2921612 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2921613 ACGAAGATCTGCAT 2921626 >seq4810 Length=1195048 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || || || | || ||||| || ||| Sbjct 316722 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAG 316663 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| || || || || |||||||| || || || ||| Sbjct 316662 ATCAGACGCTGCTGG---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 316606 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || ||||| ||||| ||||||| ||||||| Sbjct 316605 TTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTG 316546 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 316545 ACGAAGATCTGCAT 316532 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||||||||| || | || ||||| || ||| Sbjct 316494 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAG 316435 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| || || || || |||||||| || || || ||| Sbjct 316434 ATCAGACGCTGCTGG---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 316378 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || || ||||| ||||| ||||||| ||||||| Sbjct 316377 TTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTG 316318 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 316317 ACGAAGATTTGCAT 316304 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| | ||||||||||| || | || ||||| || ||| Sbjct 316950 TCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAG 316891 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| || || || || |||||||| || || || ||| Sbjct 316890 ATCAGACGCTGCTGG---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 316834 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || || ||||| ||||| || |||| ||||||| Sbjct 316833 TTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTG 316774 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 316773 ACGAAGATCTGCAT 316760 >seq4863 Length=1240122 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || || ||| Sbjct 1064069 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 1064010 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || |||||||| || || || || Sbjct 1064009 ATCAGACGCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 1063953 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| ||||| || || || Sbjct 1063952 TTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTC 1063893 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1063892 ACGAAGATCTGCAT 1063879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179576697270598