Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq4953 351 9e-92 seq16 104 2e-17 seq5094 91.5 1e-13 >seq4953 Length=802672 Score = 351 bits (388), Expect = 9e-92 Identities = 1995/3159 (63%), Gaps = 100/3159 (3%) Strand=Plus/Minus Query 130766 ATAGTCCGCATCGGTTACTGGTTCTACTTTACCTAATAAGTACCCATTACCTACCTGAGA 130825 |||||| | ||| | | | |||||| || |||| ||| || ||||| || || || Sbjct 187983 ATAGTCGGAATCACTCATAGCTTCTACGTTTCCTAGACGGTAACCGTTACCCACTTGTGA 187924 Query 130826 GAAGAAGTCATGGTTACTAGTTGTTGTAGAGATACCATTCATTACAATAGGGTTTACGTC 130885 |||||||||||||||| |||| || || || || ||||| ||||| || || || || Sbjct 187923 GAAGAAGTCATGGTTAACCGTTGCCGTTGAAATTCCGTTCATAACAATTGGATTAACATC 187864 Query 130886 TGCACTTGTTGTTGGGAATAAAGGGTTCATC-CCTAAGTTAGCTAGAGCTTTATTTAAAT 130944 | | || ||| ||| | | || || | |||| || || ||||| || || Sbjct 187863 TTC-CTCAGTGTCGGGGAACATTGGATCCTGTCCTAGATTCATTAATGCTTTGTTGGCAT 187805 Query 130945 TGTACTCCAAAAATGTATTAACATCTTTTGTCCAACCAATCTCACTATATAGTTCAGCAG 131004 |||| | || || ||| || | ||||| || | | | || || | || Sbjct 187804 TGTAACGAATGAAGGTTAAAACGTCGTCAGTCCACCCTACTTGATCGTAAAGCAGATGAG 187745 Query 131005 TATACTGTGTTTCGTTCTCCCATAATTTAAATGCTA--AATCGAT-TAC--CCATTGTTC 131059 |||||| | |||||| | |||| | || || || | | ||| ||| | || Sbjct 187744 TATACTTTTCTTCGTTTTG--ATAA---AGATCGTACAAAAAGTTATACATCCAATCTTT 187690 Query 131060 CATTTCTTTTTGTTCAGTTTCTGGTAACTGGTTAAACCCTAACTGGTATTTATAGCCGAT 131119 | || |||||||| ||||| ||| || || ||| | ||| ||||||| || || Sbjct 187689 TAAGTCGTTTTGTTCGTTTTCTCCTAATTGATTGAACTGAACTTGGAATTTATAACCAAT 187630 Query 131120 ATAGGTTCCATGTACAGACTCGTCACGAATAATTAATTTAATAATTTCGGCTGTATTAAC 131179 || |||||||| || || |||||||||||||| || || || || || || || Sbjct 187629 GTAAGTTCCATGAACGGATTCGTCACGAATAATCAACTTGATGATCTCAGCAACGTTTGG 187570 Query 131180 CATTTTTGCCTCACCTAAATAGCGTAGTGGTGTGTAAAAACCTGAGTAAAATAGGAAGCT 131239 | || | ||| | ||| | | || || || || || || || || || || | Sbjct 187569 AAGTTCGTTATGACCAAGATACCAAATAGGGGTATAGAATCCAGAATAGAAAAGAAATGT 187510 Query 131240 CTCCAACAGTACGGATGCACTCTTTTTCTGTAGTGG-TGTACCGTTTCTATAAATATCGT 131298 || | | || || | | || || | ||||| ||| | || ||| || Sbjct 187509 TTCAAGAAAGACACTTGAAATTTTCTTTTTAAGTGGATGTCCATCATCGTGGTATA--GT 187452 Query 131299 TAATAA----TATTAGCTTTATATTGTAAACGTTTATTTGTAGCTACCCATTCAAAGATA 131354 |||| | || | ||| | ||| | | || | ||| | ||| | |||||| Sbjct 187451 GAATAGATTTTTTTGGTTTTGTTTTGAAGAAATTCTTCTGTGTCACTCCAATGAAAGATC 187392 Query 131355 TTGTCAATCTCTGTAGGTGTATTAAATGTGCTAAAAATTGTTGAATAACTTTTAGCGTGT 131414 | ||||| || ||| || || || || ||| |||| || ||||| ||||| ||| Sbjct 187391 TCATCAATTTCATCAGGGGTGTTCAAAGTCGAAAAGATTGAAGAGTAACTCTTAGCATGT 187332 Query 131415 ACTGCTTCCATAAAGGCTATGTTATTTAAAACAGCTTCTTCATGTTGTGTTCTTACATCA 131474 |||| ||||||||| |||||||||||||| || ||||||||| ||| |||| Sbjct 187331 ACTGATTCCATAAACTGAATGTTATTTAAAACCGCAATTTCATGTTGCGTTACCGCATCT 187272 Query 131475 TCAAGTAGTGAGTGTACCCCCGATTCTGATTGAACTGTGTCTAATAATGTTAACCCACCA 131534 | | || | | || || || |||| || || | ||| |||||||| ||| Sbjct 187271 TTTCGAAGGGCTGCCATTCCGTCTTGAGACTGAAGGGTATCCAGTAAAGTTAACCCCCCA 187212 Query 131535 AACACTTTATTTATTAAATC--TTGCTCCATATCAGATAGCTTTGCCCAATCATTAACAT 131592 || || | | | |||| || | |||| || ||| || || | || Sbjct 187211 AAGACGTGACCAAC--AATCCATTTGTGATCATCATCAAGTGAACGCCAGTCCTTTAGAT 187154 Query 131593 CGTTACCCACAGGGACACGTGTGTCCAACCAAAATTGCTCAGTAAGCTTTTTCCATGTGG 131652 |||| | || | | || || | ||| || ||||| || | |||| ||| || | Sbjct 187153 CGTTTGATAGTGGAATTCTAGTATCAAGCCAGAACTGCTCGGTTAATTTTTCCCAGGTAG 187094 Query 131653 CTTGGTCAATTACATCATCAATCTTATTCCAGTTAATTCCTTCATA-----CTTTT--CT 131705 ||| ||||||| |||||||||| |||||||||||| ||| || ||||| || Sbjct 187093 CTTTGTCAATTTCATCATCAATAGAATTCCAGTTAATCGCTTTGTAGTTTCCTTTTGACT 187034 Query 131706 TGC-----AA------ATTCATGTGCTCAT-----CTCCT------TAAATTGTACAACT 131743 | | || ||| |||| | | ||||| |||||| || || Sbjct 187033 TTCCGGTTAAGACTTTATTAATGTCCATGTATTTCCTCCTAAGGATTAAATTACGCAGCT 186974 Query 131744 TTCACACTCTGAAACCCCTACTTCGCTTCCGTCTTCTTCGGTGAATGTTCTAACATAATA 131803 |||||| || | || ||||| | | || || || || |||| || ||||| Sbjct 186973 TTCACATTCATTGGCACCAACTTCAGTA---TTATCGTCAGTAAAGGTTCGCACGTAATA 186917 Query 131804 AATTGTTTTTATACCTTTTTTCCATGCATAATGTCTTAATAAAGTTAAGTCCCGAGTGGA 131863 | || ||| || |||||||| | ||||||| || | | ||||| || | || || Sbjct 186916 GAGTGATTTAATGCCTTTTTTGTAAGCATAATTTCGAAGGATCGTTAAATCTCTGGTTGA 186857 Query 131864 TGTAGCGCCACC-CT-CCACCTT-CCAAGGATAAAGATTTTCTGGTAACTCTGAGCGCAT 131920 | | ||| || ||| ||| ||| ||||||| | ||| | ||| ||||| Sbjct 186856 CATTTTGTCACTTCTACCATCTTTCCATTCATAAAGACCCTTTGGAATGGTTGAACGCAT 186797 Query 131921 AAACAATGTTAAACTCATGCCTTGGTCAATATGTTTTTGTGCCGTTGCGTACACGTTAAT 131980 ||| | ||||||||||| ||||| |||| || ||||| || | ||||| || | ||| Sbjct 186796 AAAGAGGGTTAAACTCATTCCTTGATCAACGTGCTTTTGAGCGGCAGCGTAAACATCAAT 186737 Query 131981 TACGTCAATCATACTGGTATCATACGCTGACTTGTAATATGGAATTGTCTTCTCAGATAA 132040 ||| | | ||| || ||||| ||||| | || || ||||| || | | || | Sbjct 186736 TACTTTACGCATGTCAGTGTCATAGGCTGATTCATAGTAAGGAATGGTGTCATTTGAAAG 186677 Query 132041 ACGAGGCGCAGGGTAATAAGTTTTACCTGTTTTACCATCTTGACGTTCTTCAATCATAGA 132100 || || ||||| ||| | | || | || ||||| ||| ||||||| | Sbjct 186676 GTATGGAGCCGGGTAGTAAATGGTTCCAATCTTTGATTCTTGGCGTGCTTCAATTTTTTG 186617 Query 132101 GATAATTGGGTGCAGTGAAGAGGTAGTCTCATTAACATAGGCAATACTACCATTCGGAGC 132160 | ||| || |||| | || | || || || ||| | |||||| ||||| Sbjct 186616 AACAATCGGATGCAAACTTGCTGTTGCATCCCCAATGTAAGCAGTTGAACCATTAGGAGC 186557 Query 132161 CACGGCTAAACGGTTTTGGTGGTATAGACCACTTTCAATAA-TGCTGTTTCTTAATGTTT 132219 ||||| | || || || ||||| |||||| || || | || | || |||| | | Sbjct 186556 TACGGCCATGCGATTCTGATGGTAGAGACCATACTCCATGACTGATTGTT-TTAAAGCGT 186498 Query 132220 CCCAATCTTTTACATTAGGTAGTACCACTCCATCAAATACTTCTGCCACCTTACTAGAGA 132279 ||| |||||| | | || | | || |||||||| | | | || ||| || Sbjct 186497 TCCAGTCTTTTTCGGTTGGAATAAAGACGCCATCAAACAGTGATTTTACTTTATCTGAC- 186439 Query 132280 TTTCCTGACTTAGTGTTGGTACA-TATTCATCAAAGTAAGAGCCGTCTGCATACTTAGAG 132338 ||| | | | | |||||| || | ||| || ||||| || || ||||| ||| Sbjct 186438 TTTGGAGCCCAACTCTTGGTAGTGTACTGATCGAAATAAGATCCATCAGCATATTTACTT 186379 Query 132339 TTCTCAAAGTTGTAGAATGTTGTGTCACGCTCTTTAGCAATCTTATTGCTTGCTACCAAA 132398 || || || || | ||| | | | || || ||||| || | ||| || || Sbjct 186378 TTTTCGAAATTATGGAAAACTTTTCCGCGATCCTTAGCCATTTGATTAGAAGCCTTCAGG 186319 Query 132399 GTAGCATAATTAATTAATTCAAACAG--GGCATCTGTCATTTCAATAGATTCAGGTGAGC 132456 || || || | || || | || || | || | |||||| || |||||||||| Sbjct 186318 GTCCAGTAGTTTA--AAAGCATAAAGTAGGTACTGGTAAATTCAATGGACTCAGGTGAGC 186261 Query 132457 CGTATTCTACTTGGTTACTTGCGAACCACGCATGTAGCCCCATTGCCCCTAAACCGATTG 132516 | || | | || || | || || | | ||| || ||||| || || ||||| |||| Sbjct 186260 CATAGTACATATGATTTTTAGCAAAATATGAATGAAGACCCATGGCTCCCAAACCAATTG 186201 Query 132517 TATGAGCTTTATCGTTACCATTCTTGATAGTAGGCACTGCTTTTATATTTGACACGTCTG 132576 ||| | || || || | || | | || || | || || ||| || | Sbjct 186200 AGTGACTTAGTTCATTTCCGTGTTTAACTGATGGAACCACGTTAATTGATGAGTGATCGG 186141 Query 132577 TAATATATGTTAGAGCTCTTACCATCGTCTCAATTGATGCCACTACATCATTAGATGTTT 132636 ||| | ||||||||| | ||||| | |||| |||| | | || |||| Sbjct 186140 TAACGAAGGTTAGAGCTTTCACCATGGCTTCAACTGATTTACCGAAGTCTGGTGATG--- 186084 Query 132637 CTAACAAGTTAAGGATGTTAATTGAACCTAAATTACAGCTAATGTCTGCACCTAACTCTT 132696 | | | ||| | | |||| | || || | |||||| | || | ||||||| || Sbjct 186083 CCATGAGGTTCACTACGTTAGTAGAGCCCAGATTACATGAGACATCGGTTCCTAACTGTT 186024 Query 132697 CGTATACTTGTTCATCATTTAGCTTAGATGGTGTCTGCACTTGAAGGATTTCTGAACATA 132756 |||| ||||||||| | | | || |||||||| || || || ||||| | ||| | Sbjct 186023 CGTAGTTTTGTTCATCGTCAACGATGGAAGGTGTCTGAACCTGGAGAATTTCGGTACACA 185964 Query 132757 GATTGCTCATAATGATTTTGCCATCAATAGGATTGGCTTTATTTACAGTACTAACATTCA 132816 |||| ||||| | || ||||| |||| ||||| | || || || || || | Sbjct 185963 GATTACTCATGACAATCTTGCCGTCAACCGGATTATCACGGTTAACGGTGTCAATGTTGA 185904 Query 132817 TAATATATGGGTAACCTGACTCTTGTTGTAAACGGCTAATTTCTTCTTCCAAATCTCGTG 132876 |||| ||||| || || || |||||||||| | ||||| ||| | || || | Sbjct 185903 TAATGTATGGATAGCCAGATTCTTGTTGTAGTTTTCCGATTTCGGTTTCAAGTTCACGAG 185844 Query 132877 C---ATTCATTACCTTACTTCTGATATTTGGGTTCTGAATCATGTTATTGTATTCTGAAT 132933 | | || || |||| || | || ||||| | ||| || | ||||||| | Sbjct 185843 CTCGAATCTTTTTCTTAGAAATGTTCTT---GTTCTTGACCATATTGTCGTATTCTTTAG 185787 Query 132934 CAATGTCTACAAATGAGAACGGTACACCGTATTCTTTAGCAACATCATATGGAGAAAATA 132993 ||| || ||| ||||||| || || || || || |||||||||||||| |||| Sbjct 185786 AAATATCAACATATGAGAAGGGAACTCCATACTCACGTTCAACATCATATGGACTGAATA 185727 Query 132994 AGTGAATTACATCCCCAGACTCAGCTAGCTCATAAAATTTATCGGGAACAACTACTCCCA 133053 || || |||| || | ||| ||||||||||||||||| || ||||| || || | Sbjct 185726 GGTACATATCATCATCATTTTTAGCGAGCTCATAAAATTTATCTGGCACAACCACACCAA 185667 Query 133054 AAGAAAGTGTTTTGATTTG---CTTTGCGGATTCTGCATTTTCTTTTCTAGTTGATAAAA 133110 ||||| || || | | | ||| || || || ||||| ||| || | || | Sbjct 185666 GTGAAAGGGTGTTTACTCGGATTTTTTCG---TCGGCGTTTTCCTTTTTAACTCCCAAGA 185610 Query 133111 AGTCCATAATATCCGCATGGAAAACATTTAGATAGACTGCGCCTGCACCTTGTCTTTGCC 133170 | | || || || | |||||||||| | ||||| || | || ||||| | |||||| | Sbjct 185609 ATTGAATGATGTCAGGATGGAAAACACTAAGATAAACAACCCCAGCACCGTTTCTTTGGC 185550 Query 133171 CTAATTGATTTGCGTACCGGAAACCATCTTCTAGCATTTTCATAACAGGGACGACACCAC 133230 ||| ||| || | || ||||| ||||||||| | ||||| || || | ||||||| Sbjct 185549 CTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGTAACTTCATTACTGGAAGAACACCAC 185490 Query 133231 TACCTGCCCCCTCAATTCCCTTAATAGGGTCACCAAGAGCTCTTAAGTTTGAAAGATTTA 133290 | |||| || | ||| ||||| || |||||| |||||||| ||| |||||||| | Sbjct 185489 TGGCTGCTCCTTGAATGTGTTTAATGGGATCACCAGCAGCTCTTAGGTTAGAAAGATTAA 185430 Query 133291 TGCCGACTCCTCCGCCAAGTTTAGATAGTTGAAGTGCACTGTTCAACGTTCTACCAATTG 133350 | || |||||||| |||| ||| |||| |||||| || || | |||||||| || | Sbjct 185429 TTCCAACTCCTCCACCAATTTTGGATAATTGAAGAGCTGAATTAATGGTTCTACCGATCG 185370 Query 133351 AAGACATTGAATCTTCTACTTGAATTAGAAAACAGCTGACAT--ACTCCCCTCTTCTAAG 133408 | ||| ||| |||| || ||||| ||| || |||| || | | Sbjct 185369 TATTCATGTTATCGGTGGTCTGAAGTAAGAAACA--TGAAATCAACTCACCCCGACGTTT 185312 Query 133409 TCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTATCTACGGTTAATTAGCTCATC 133468 | || || || |||||||||||||| |||||||| | | | | ||||| ||||| Sbjct 185311 CTTTCCAGCGTTCAAAAAAGTAGGGGTGGCAGGTTGAAAACGCTGATGAATTAATTCATC 185252 Query 133469 TGCAATCTTCATAGCAAGCTCTTCGTCACCATCACCCATTGTGAGTGCATTAAACGCTAC 133528 || | |||||||| | | || |||||||| | | | | ||| || | ||| Sbjct 185251 AGCTAGATTCATAGCTAATTTTTGGTCACCATTAGCTAGAAACAATGCGTTCATTGCTGT 185192 Query 133529 TCTATCTTCATAACGCTCTAGGTA----TCGTTCCCCATCATCTGTTTTCATTGCGTATT 133584 | |||| || | |||| ||| ||| || || |||||||||||||||| Sbjct 185191 CCGATCTATGTAGCCTTCTAAGTACATGGAGTT----GTCGTCAGTTTTCATTGCGTATT 185136 Query 133585 GTTTATAGAAACGGTAAGCCCCCATAAATGTGTCGAATCTGAACTTTTTACTATAGATGA 133644 | |||||| |||||| |||| |||| | ||| || |||| ||||| | Sbjct 185135 GAGCATAGAACTTGTAAGCAGCCATGAATGATTTGAAGTGAAAATTTTGACTATCCAAAT 185076 Query 133645 ACTTAAATAAtttttttATAAATTCCATTGAGTACTT-GTCAGTAATTACTGTCTTATCA 133703 |||| |||| || | || ||| | || |||||| | | || || ||| ||| Sbjct 185075 ACTTGTATAACTTCTCAATGAATGAAAATGGGTACTTATTGACGAA--ACCCTCT--TCA 185020 Query 133704 ATGTA-TCCTTCTCGAATTAGATAACTAATTTTCTCCTCTAAAGAGTAGAAAAATACTGT 133762 ||||| | | || |||||| ||| ||| || | ||| || | || || || Sbjct 185019 ATGTAGTTATGCT-TAATTAGGTAATTAAAACGATCTTTTAACGAATCAAACTTAACGGT 184961 Query 133763 GTTCTTGTTTACATGTTCTAAAAAGAATGCTCTAACAGCTTCTTTATCTTTGTCTAACTG 133822 ||| || || | |||| |||||| || | | ||||| | |||||| || | || Sbjct 184960 ATTCGGATTAACGTTTTCTTTAAAGAAAGCCTTCAGTGCTTCCTGATCTTTTTCCAGTTG 184901 Query 133823 AATCTTTCCGTTATTAGGGATATTCAATTGGTTATTAAG 133861 |||| || | ||||||||| | || ||||| || Sbjct 184900 AATCCGGCCATCGACAGGGATATTAATTTCATTATTTAG 184862 >seq16 Length=193047 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6872 CAGCAAAAGAGTGGATTGCACAACGTGAATCTAGTGGTTCTTATGATGCAACAAATGGTC 6931 |||| |||| ||||| | ||||||||| |||| || || ||| |||||||| Sbjct 174134 CAGCCAAAGCTTGGATCACTTCACGTGAATCAGGTGGCTCATACACTGCTTCAAATGGTA 174075 Query 6932 AGTATATTGGTCGTTACCAATTATCTGCCTCTTATTTAAATGGTGACTATTCACCTGCCA 6991 | || ||| |||||||||||| || || ||||||||||||||||||| || | Sbjct 174074 ACTACTACGGTAAGTACCAATTATCTAAGTCATACTTAAATGGTGACTATTCACAAGCTA 174015 Query 6992 ACCAAGAACGAGTAGCTGATGAGTATGTAGCAGGTCGCTATGGCTCATGGGAGAACGCAA 7051 ||||||| |||| ||| | | || ||| | || ||||| |||||| ||| Sbjct 174014 ACCAAGATAGAGTTGCTAACCAATACGTAACTTCACGTTATGGTTCATGGAGTGGTGCAC 173955 Query 7052 AATCTTTCTGGTTAGCAAATGGTTGGTACTAAAAT 7086 |||| |||||| | || | |||||||||||| || Sbjct 173954 AATCATTCTGGCAATCACACGGTTGGTACTAAGAT 173920 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 6886 ATTGCACAACGTGAATCTAGTGGTTCTTATGATGCAACAAATGGTCAGTATATTGGTCGT 6945 || |||||| |||||| || || || ||| | |||||||||||| |||||| Sbjct 100523 ATCGCACAAGTGGAATCTGGTAACTCATACAGTGCCAGAAATGGTCAGTACATTGGTAAA 100464 Query 6946 TACCAATTATCTGCCTCTTATTTAAATGGTGACTATTCACCTGCCAACCAAGAACGAGTA 7005 |||||||||||| | || || |||||||||||||| || || || ||||||||||| ||| Sbjct 100463 TACCAATTATCTTCATCATACTTAAATGGTGACTACTCTCCAGCTAACCAAGAACGGGTA 100404 Query 7006 GCT 7008 ||| Sbjct 100403 GCT 100401 >seq5094 Length=366253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 136980 ATGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAA 137039 |||||| ||| ||| ||||||||| |||||| ||||||||||||| |||||| ||||| Sbjct 1113 ATGGACCTTGTAGGACTCGAACCTACGACCGGACGGTTATGAGCCGTCTGCTCTAACCAA 1054 Query 137040 CTGAGCTAAACGTCC 137054 |||||||||| |||| Sbjct 1053 CTGAGCTAAAGGTCC 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454473192539520