Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 159 4e-34
seq4198 93.3 5e-14
>seq4678
Length=1229792
Score = 159 bits (176), Expect = 4e-34
Identities = 310/458 (68%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818
|| || || ||| |||||| |||||||| ||||| || |||| ||| |||||||
Sbjct 1146123 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATG 1146182
Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGA 125878
|| | || || ||||| | ||| | || || ||| || | || || ||||||
Sbjct 1146183 AAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGA 1146242
Query 125879 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 125938
|| | || |||||||||||| |||||| ||| ||||||| ||||| || |||
Sbjct 1146243 TCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACC 1146302
Query 125939 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGA 125998
|| || || || || |||| ||| |||||| ||||| || || || | ||| ||
Sbjct 1146303 GGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATG 1146362
Query 125999 ATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGG 126058
||| || || |||| | || | || ||| | ||| ||||| || |
Sbjct 1146363 ATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAG 1146422
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|| |||||||| || |||||||| || ||||| |||||| || || ||||| || ||
Sbjct 1146423 TGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCG 1146482
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
|||||||||| ||||||||| | ||| || |||||| || ||||| ||
Sbjct 1146483 CGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCG 1146542
Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTT 126216
|| ||||||| || ||||| ||||| | ||||||
Sbjct 1146543 GCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTT 1146580
>seq4198
Length=487851
Score = 93.3 bits (102), Expect = 5e-14
Identities = 250/374 (67%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842
|| ||| || || ||||| || || || | || |||||| | ||| ||||| ||
Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838
Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902
|| || || | | | ||| | | | ||||| |||||||||||| || | ||
Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898
Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 10961
|| | || || ||||| |||||||| || | || | ||| |||| || || ||
Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957
Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 11018
| ||||| ||||||||||| ||||| | || || | | ||| |||| || | ||
Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014
Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078
| || || || || || | ||||| ||||| || |||||||||||||| | ||
Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074
Query 11079 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137
| | | || | | ||| || || |||| |||||| || ||||| ||||| | |||||
Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133
Query 11138 TTCCCCGTCCCAGG 11151
|| || || || ||
Sbjct 58134 TTACCAGTGCCCGG 58147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597315212564280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |