Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4678 159 4e-34 seq4198 93.3 5e-14 >seq4678 Length=1229792 Score = 159 bits (176), Expect = 4e-34 Identities = 310/458 (68%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || ||| |||||| |||||||| ||||| || |||| ||| ||||||| Sbjct 1146123 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATG 1146182 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGA 125878 || | || || ||||| | ||| | || || ||| || | || || |||||| Sbjct 1146183 AAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGA 1146242 Query 125879 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 125938 || | || |||||||||||| |||||| ||| ||||||| ||||| || ||| Sbjct 1146243 TCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACC 1146302 Query 125939 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGA 125998 || || || || || |||| ||| |||||| ||||| || || || | ||| || Sbjct 1146303 GGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATG 1146362 Query 125999 ATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGG 126058 ||| || || |||| | || | || ||| | ||| ||||| || | Sbjct 1146363 ATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAG 1146422 Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || |||||||| || |||||||| || ||||| |||||| || || ||||| || || Sbjct 1146423 TGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCG 1146482 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||||| ||||||||| | ||| || |||||| || ||||| || Sbjct 1146483 CGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCG 1146542 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTT 126216 || ||||||| || ||||| ||||| | |||||| Sbjct 1146543 GCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTT 1146580 >seq4198 Length=487851 Score = 93.3 bits (102), Expect = 5e-14 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 10961 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 11018 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014 Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078 | || || || || || | ||||| ||||| || |||||||||||||| | || Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074 Query 11079 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133 Query 11138 TTCCCCGTCCCAGG 11151 || || || || || Sbjct 58134 TTACCAGTGCCCGG 58147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597315212564280