Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4810 114 1e-20 seq4644 100 3e-16 seq4705 87.8 2e-12 seq4935 86.0 7e-12 seq4990 84.2 2e-11 seq4734 84.2 2e-11 >seq4810 Length=1195048 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||||||||| ||| |||||| || || |||||||| | || || || | Sbjct 316975 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCC 316916 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 316915 GTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 316856 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| || | | |||||| | || || || | ||||| Sbjct 316855 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGAT 316796 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || | ||||| || ||||| ||||| Sbjct 316795 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| || | ||| |||||| || || |||||||| | | Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || || || || || ||||||||||| | || Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | |||||| | || || Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACC 316351 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| || ||||| || | ||||| || ||||||||||| || Sbjct 316350 TCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTT 316301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| || | || |||||| || || ||||| |||| Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || || || ||||||||||| | || Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | || ||| | || || Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || | ||||| || ||||| ||||| Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 >seq4644 Length=1132839 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||||||||| || |||||| || || ||||| || | Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || | |||||||| || | || Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||||| ||| || || | || | | |||||| | ||||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || || || ||||| |||||||| |||||| Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 >seq4705 Length=887316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 674648 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 674707 Query 57065 TATACTACCGAGGA--TTGAAT 57084 ||||||| |||||| |||||| Sbjct 674708 TATACTATCGAGGATGTTGAAT 674729 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 673795 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 673854 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 673855 ATACTATCGAGGATT 673869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 674107 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 674048 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 674047 TATACTATCGAGGAT 674033 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 828568 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 828627 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 828628 TATACTATCGAGGAT 828642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 675074 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 675015 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 675014 ATACTATCGAGGAT 675001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 759321 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 759262 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 759261 ATACTATCGAGGAT 759248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 790704 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 790763 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 790764 ATACTATCGAGGAT 790777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 790436 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 790377 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 790376 TACTATCGAGGAT 790364 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 823344 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 823285 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 823284 ATACTATCGAGGA 823272 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 828237 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 828178 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 828177 ATACTATCGAGGA 828165 >seq4935 Length=1017411 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 619273 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 619214 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 619213 ATACTATCGAGGATT 619199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 619572 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 619631 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 619632 ATACTATCGAGGAT 619645 >seq4990 Length=1454503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 63449 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 63508 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 63509 TATACTATCGAGGA 63522 >seq4734 Length=3530270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2490371 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2490312 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 2490311 ATACTATCGAGGAT 2490298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543177891787440