Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4765 156 4e-33 seq4810 120 3e-22 seq4644 116 4e-21 seq4863 98.7 1e-15 >seq4765 Length=3541379 Score = 156 bits (172), Expect = 4e-33 Identities = 538/833 (65%), Gaps = 6/833 (1%) Strand=Plus/Minus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 ||||| ||||| || || |||| || ||||| || || || | |||||||| ||| Sbjct 3010800 TTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCG 3010741 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 ||||| | ||| ||||| | || | ||| | | || | | | ||||| Sbjct 3010740 GTTTTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGC 3010681 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | || | | | ||| ||||| || ||||||||||| || || |||||||| || ||| Sbjct 3010680 TCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCC 3010621 Query 153852 ATGTCAATCAAGTTTTT-ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTC 153910 || | ||| | ||| || | || ||||| || || ||||| | | || | Sbjct 3010620 ATTTTAATGGTGGATTTCACAGAG-ATCTCCCAAACCGTCTTGTACAGATCGCGAACATT 3010562 Query 153911 GTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCAT 153970 | ||| ||| || || ||||| | | ||| | | | || || || ||| Sbjct 3010561 CTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCAT 3010502 Query 153971 GTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTG 154030 || || || |||| | || | || ||| | | ||| ||||| | || || Sbjct 3010501 GTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTG 3010442 Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 || ||||||| | |||||||| ||| | ||| ||||| |||||||||| ||||| Sbjct 3010441 GAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTC 3010382 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 ||||||||| | ||| || || || | ||| |||||||| ||||| | || |||||| Sbjct 3010381 GTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTT 3010322 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAAT--TTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || | |||||||| || || | | || | | |||||| | ||| | ||| || Sbjct 3010321 TCTAACGCCGTGTTTCTTGAT-CG-ATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAA 154268 ||| | || |||||||||||| || | | ||| ||| | || ||| | || Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204 Query 154269 CTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328 | ||||| || | | | |||| || ||||||||||| | || |||| ||| Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144 Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388 | ||||| || |||| || | | || | || |||||||| || |||| | Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084 Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448 | | | || ||||||||||| || |||| ||| | |||| ||| | || | | | Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024 Query 154449 TTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501 ||||||| |||| || ||| |||||||| ||||| || ||||| || || Sbjct 3010023 TTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTT 3009971 Score = 111 bits (122), Expect = 2e-19 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||| || || | || |||||| | ||||| ||||||||||| Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||| || ||||||||||||||||| || || | | || ||||| Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 2921548 Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||| || | || | ||| || || || || | ||| | ||||||||| || | Sbjct 2921549 GACATTTTCGATAGTGT--CCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGG 2921606 Query 64424 GTTTTTACGAAAATTTGCATTTT 64446 || || ||||| || ||||| || Sbjct 2921607 GTCTTCACGAAGATCTGCATCTT 2921629 >seq4810 Length=1195048 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || ||||||||||| | | |||||| |||| || |||||| Sbjct 316506 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGC 316447 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || ||||||||||| || ||||| || || || || || || || Sbjct 316446 TTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 316387 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | ||| || || || || || | || | |||||||||||| Sbjct 316386 GCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTTGCCGGTC 316327 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || ||||| |||||||| || Sbjct 316326 AAAGTCTTGACGAAGATTTGCATGTT 316301 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | |||| ||||| || || || |||||||| || | | Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||| |||||| | || || ||||||||||| || ||| Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | ||||| || || || Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||||||| || ||||| || ||||| Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | || || | ||| | || || || || || ||||||||||| | Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||| |||||| | || || ||||||||||| || ||| Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || || || || Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACC 316807 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||||||| || ||||| || ||||| Sbjct 316806 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 >seq4644 Length=1132839 Score = 116 bits (128), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | || | || || || || || |||||||| |||| | Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||||||||| ||||||| |||||||| || ||||| Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | |||||| Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 751899 Query 64397 TCTACAGTTACGGTCTTGCCG-GTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | |||||| ||| || | ||| || || || || |||||| Sbjct 751898 TCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | || | || || || || || |||||||| || | | Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| ||||||||||| || | || | |||||||| || ||||| Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | ||||| Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| ||||| | ||| || ||||| || |||||| Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || |||||||| || | | Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || | |||||||| || ||||| Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | ||||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| ||||||| || || || || || |||||| Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| |||| || |||||||||||| Sbjct 752732 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 752673 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || || ||||| || || ||||| ||||| ||| Sbjct 752672 GCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTTTGGCCTTC 752613 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | |||||||| | ||| | |||||| || |||| || Sbjct 752612 ACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTC 752553 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 752552 TTCACAAAGATCTGCATT 752535 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | || | || || || || || |||||||| || | | Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || | |||||||| || ||||| Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | || || Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | || | |||||| || ||||| ||||| || || || ||||||| Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621 >seq4863 Length=1240122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | || || |||||||||||| Sbjct 1064075 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCG 1064016 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||| || || ||||| || || || || || || || ||| Sbjct 1064015 GCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1063956 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | ||||| || | || | |||||||||||| | ||| Sbjct 1063955 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTT 1063896 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1063895 TTCACGAAGATCTGCAT 1063879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612691576040