Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 156 4e-33
seq4810 120 3e-22
seq4644 116 4e-21
seq4863 98.7 1e-15
>seq4765
Length=3541379
Score = 156 bits (172), Expect = 4e-33
Identities = 538/833 (65%), Gaps = 6/833 (1%)
Strand=Plus/Minus
Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731
||||| ||||| || || |||| || ||||| || || || | |||||||| |||
Sbjct 3010800 TTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCG 3010741
Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791
||||| | ||| ||||| | || | ||| | | || | | | |||||
Sbjct 3010740 GTTTTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGC 3010681
Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851
| || | | | ||| ||||| || ||||||||||| || || |||||||| || |||
Sbjct 3010680 TCAGCCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCC 3010621
Query 153852 ATGTCAATCAAGTTTTT-ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTC 153910
|| | ||| | ||| || | || ||||| || || ||||| | | || |
Sbjct 3010620 ATTTTAATGGTGGATTTCACAGAG-ATCTCCCAAACCGTCTTGTACAGATCGCGAACATT 3010562
Query 153911 GTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCAT 153970
| ||| ||| || || ||||| | | ||| | | | || || || |||
Sbjct 3010561 CTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCAT 3010502
Query 153971 GTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTG 154030
|| || || |||| | || | || ||| | | ||| ||||| | || ||
Sbjct 3010501 GTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTG 3010442
Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090
|| ||||||| | |||||||| ||| | ||| ||||| |||||||||| |||||
Sbjct 3010441 GAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTC 3010382
Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150
||||||||| | ||| || || || | ||| |||||||| ||||| | || ||||||
Sbjct 3010381 GTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTT 3010322
Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAAT--TTTAAATCTGCCCAATTCCACAAGTTGGTA 154208
|| | |||||||| || || | | || | | |||||| | ||| | ||| ||
Sbjct 3010321 TCTAACGCCGTGTTTCTTGAT-CG-ATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTG 3010264
Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAA 154268
||| | || |||||||||||| || | | ||| ||| | || ||| | ||
Sbjct 3010263 GGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAG 3010204
Query 154269 CTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328
| ||||| || | | | |||| || ||||||||||| | || |||| |||
Sbjct 3010203 GTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAT 3010144
Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388
| ||||| || |||| || | | || | || |||||||| || |||| |
Sbjct 3010143 ATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTC 3010084
Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448
| | | || ||||||||||| || |||| ||| | |||| ||| | || | | |
Sbjct 3010083 ATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATA 3010024
Query 154449 TTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501
||||||| |||| || ||| |||||||| ||||| || ||||| || ||
Sbjct 3010023 TTCGATTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTT 3009971
Score = 111 bits (122), Expect = 2e-19
Identities = 149/203 (73%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || |||||||| || || | || |||||| | ||||| |||||||||||
Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || |||||||| || ||||||||||||||||| || || | | || |||||
Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 2921548
Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
||| || | || | ||| || || || || | ||| | ||||||||| || |
Sbjct 2921549 GACATTTTCGATAGTGT--CCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGG 2921606
Query 64424 GTTTTTACGAAAATTTGCATTTT 64446
|| || ||||| || ||||| ||
Sbjct 2921607 GTCTTCACGAAGATCTGCATCTT 2921629
>seq4810
Length=1195048
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || || || || || ||||||||||| | | |||||| |||| || ||||||
Sbjct 316506 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGC 316447
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || || ||||||||||| || ||||| || || || || || || ||
Sbjct 316446 TTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 316387
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| || ||| | ||| || || || || || | || | ||||||||||||
Sbjct 316386 GCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTTGCCGGTC 316327
Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || ||||| |||||||| ||
Sbjct 316326 AAAGTCTTGACGAAGATTTGCATGTT 316301
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | || || | |||| ||||| || || || |||||||| || | |
Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | || || |||||||| |||||| | || || ||||||||||| || |||
Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| || ||| | ||||| || || ||
Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||||||||| || ||||| || |||||
Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| |||| | || || | ||| | || || || || || ||||||||||| |
Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| |||| || |||||||| |||||| | || || ||||||||||| || |||
Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| || ||| | || || || || ||
Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACC 316807
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||||||| || ||||| || |||||
Sbjct 316806 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
>seq4644
Length=1132839
Score = 116 bits (128), Expect = 4e-21
Identities = 164/229 (72%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | || | || || || || || |||||||| |||| |
Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | || || |||||||||||||| ||||||| |||||||| || |||||
Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| || || || || || || ||| ||| ||| | || || | ||||||
Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACT 751899
Query 64397 TCTACAGTTACGGTCTTGCCG-GTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | ||| | |||||| ||| || | ||| || || || || ||||||
Sbjct 751898 TCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | || | || || || || || |||||||| || | |
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| ||||||| ||||||||||| || | || | |||||||| || |||||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| || || || || || || ||| ||| ||| | || || | |||||
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752127
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | || | |||||| ||||| | ||| || ||||| || ||||||
Sbjct 752126 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | ||| | || || || || || |||||||| || | |
Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| |||| || |||||||||||||| | || | |||||||| || |||||
Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| || || || || || || ||| ||| ||| | || || | |||||
Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | || | |||||| ||||||| || || || || || ||||||
Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307
Score = 105 bits (116), Expect = 7e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | || |||||| |||| || ||||||||||||
Sbjct 752732 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 752673
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | |||||||| || || || ||||| || || ||||| ||||| |||
Sbjct 752672 GCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTTTGGCCTTC 752613
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || || | |||||||| | ||| | |||||| || |||| ||
Sbjct 752612 ACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTC 752553
Query 64427 TTTACGAAAATTTGCATT 64444
|| || || || ||||||
Sbjct 752552 TTCACAAAGATCTGCATT 752535
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| | || | || || || || || |||||||| || | |
Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| |||| || |||||||||||||| | || | |||||||| || |||||
Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||| || || || || || || ||| ||| ||| | || || | || ||
Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACC 751670
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445
|| | || | |||||| || ||||| ||||| || || || |||||||
Sbjct 751669 TCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621
>seq4863
Length=1240122
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | | ||||| | || || ||||||||||||
Sbjct 1064075 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCG 1064016
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || |||||||| || || ||||| || || || || || || || |||
Sbjct 1064015 GCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1063956
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || || | ||||| || | || | |||||||||||| | |||
Sbjct 1063955 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTT 1063896
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 1063895 TTCACGAAGATCTGCAT 1063879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499612691576040
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