Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4198 141 5e-29 >seq4198 Length=487851 Score = 141 bits (156), Expect = 5e-29 Identities = 434/663 (65%), Gaps = 11/663 (2%) Strand=Plus/Plus Query 65943 GCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCT 66002 || || || || || |||| || | ||||| || ||||| || ||||| || || Sbjct 210612 GCGCTGGGTATTGGTGGGTTGCCCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGC 210671 Query 66003 TCAGGGAAGTCAACGTTGTGC-CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 66061 || || || | ||| | ||| || || || | || | || || ||| ||||||| Sbjct 210672 TCTGGTAAAACCACGCT-TGCGCTGCATGCTATTGCAGAAGCACAAAAGCGTGGTGGCAC 210730 Query 66062 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 66121 || | || || ||||| ||| | | ||||| | || ||| ||| || || Sbjct 210731 TTGTGCTTTTATTGATGCCGAGCATGCGTTGGACCCCGGTTATGCCAAAAAGCTGGGCGT 210790 Query 66122 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 66181 |||||| || || || || | |||||||| | || || ||||| |||| || | Sbjct 210791 GGATGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGC 210850 Query 66182 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 66241 || ||||| || |||| || | | | || || || ||| || || || Sbjct 210851 AGATACACTCGTGCGATCCGGCGCTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACT 210910 Query 66242 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 66301 ||||||||| || || || ||||| ||||| || || || || ||||| ||||| || Sbjct 210911 GGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCATGTTGGCCTTCATGCGCG 210970 Query 66302 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 66361 ||||| ||||| |||| ||||| || || ||| | || || |||| || || | Sbjct 210971 TTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGAT 211030 Query 66362 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAATGAG 66419 | | |||| ||| | ||| ||| || || | || | || ||| || Sbjct 211031 GATTTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAAT--CCG---GAA 211085 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGG 66479 || ||||| |||||||| || ||| ||||| | || |||||||||||| | ||| | Sbjct 211086 ACAACCACGGGTGGTAATGCCCTGAAGTTCTATTCTTCCGTGCGTATGGATATTCGCCGC 211145 Query 66480 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC-GGCAACCGCACGCGCGTGAAGGTTGT 66538 |||| | ||||| ||||||| || | || || | |||||||| |||||||| Sbjct 211146 ATCGGGTCTATCAAGGACAAGGATGAGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGT 211204 Query 66539 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 66598 || |||||| ||||||| || ||| |||| || ||| ||| | |||||||| || Sbjct 211205 TAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGG 211264 Query 66599 CAT 66601 ||| Sbjct 211265 CAT 211267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242455207789772