Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4765 316 2e-81 >seq4765 Length=3541379 Score = 316 bits (350), Expect = 2e-81 Identities = 1034/1584 (65%), Gaps = 67/1584 (4%) Strand=Plus/Plus Query 93722 ATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTT 93781 ||||||||| ||||| || |||||| ||||| | || |||| | || | | || Sbjct 3008970 ATTACTTTGGTTTCAAGACCCTGGAGCGTTCGTATTTGCTGAAGAGAAACGGTAAGATTG 3009029 Query 93782 CCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGC 93841 ||||||| ||||| || ||||||||||||| || || || || || || | ||||| Sbjct 3009030 CCGAGCGGCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACAT-- 3009087 Query 93842 CGAATGTTTTGCGGGCTTTCAGAGACATGCGG------GACA-AGAGGTATACCATG--- 93891 ||| ||| | || | ||||||| | | || || | | || Sbjct 3009088 CGA------TGCCG-CTGTG-GAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACAC 3009139 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | || ||||||||| ||| | || |||| || ||| | || || || |||| Sbjct 3009140 GCCTCGCCCACCCTGTTCGCCGCTGCCACGAACCGG--CCGCAGCTCTCGTCCTGCTTCC 3009197 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 | |||| | | | || || ||| || ||||| | | | ||||||| | Sbjct 3009198 TCCTGACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCA 3009257 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 ||||| || | ||||| || || || | | |||||| | | ||||||| ||| Sbjct 3009258 TGATCTCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCA 3009317 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | | ||| | || || |||||||||||||| |||||||| || ||||| || ||||||| Sbjct 3009318 CTTCCATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCA 3009377 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 |||| | ||| || ||||||||||||||||| || | | || ||| | || || ||| Sbjct 3009378 ACAATGTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCT 3009437 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 || | |||||||||||| |||| || | ||| | || ||| ||||||| ||||| Sbjct 3009438 ATTTGGAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCA 3009497 Query 94250 ACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 | || ||||| | || | || || ||||| || |||||| | || || || |||| Sbjct 3009498 AGGA---GGAGAATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTA 3009554 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 |||| ||||||||| || |||| || | || || | | |||||||| | Sbjct 3009555 TGAAGCGCGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCC 3009614 Query 94367 TGTCCGACGTTTGTGG-ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGC 94425 || || || || || || | ||||| | |||| | ||||| | |||| Sbjct 3009615 TGCAGGATGTGTGGGGCGACGAG-TTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGA 3009673 Query 94426 AAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482 ||||||| ||| |||| | ||| | |||||| ||| | || | ||| Sbjct 3009674 AAGGCCAATCGGACAGTTA---AGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAG 3009730 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542 |||||||| || | || ||||| | |||||||| | |||| ||| ||| ||| Sbjct 3009731 GTGGAGACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAG 3009790 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||| | | || |||||| || ||||||||||| || || |||||||| | || Sbjct 3009791 CAGAATGTGGGCACCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCG 3009850 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662 || |||||||| || || || ||||||| |||||| || || || | || | || Sbjct 3009851 CCCGACGAGATCGCCGTCTGCAACCTGGCGTCCATC--GCTCTCAACAT--GTTTGTGAC 3009906 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 ||| || | ||| |||| | || |||| | | || | | || Sbjct 3009907 GCC----CGAAAA----GACGTACGATTTTAAGAAGCTGAAGGAGGTCACCAAGACTGTG 3009958 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | | ||| ||||||| | | || |||| |||| || ||| | |||||||| ||| Sbjct 3009959 GCCAAGAATCTGAACAAGATTATTGACATCAACTATTATCCCCTGCCGGAGGCCAGGAAA 3010018 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || || ||| |||||| ||||| ||||| ||||| ||||| |||| || || || | Sbjct 3010019 TCGAATATGAGGCATCGCCCCATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATT 3010078 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTC 94899 ||||| | | |||||||| ||| | ||||||| ||||| | || || Sbjct 3010079 CTGATGAGATTCCCCTACGA---AAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTT 3010135 Query 94900 GAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 |||| || ||||| || ||| | ||| | | || ||| | |||| ||| | || Sbjct 3010136 GAAACGATATATTATGGAGCCCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAA----GG 3010191 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCT 95017 || | ||| | | || || |||| || | |||| || | |||| |||| | | Sbjct 3010192 CCCGTATGAAAC-CTACGAGGGCAGCCCCGTGAGCAAGGGAATCCTCCAGTACGACATGT 3010250 Query 95018 GGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAA 95075 ||| | ||| || || | ||||||| ||||| | | || | | || Sbjct 3010251 GGGACAAGGTACCCACGAACCTCTGGGACTGGGCAAAGCTGAAGGAATCGA--TCAAGAA 3010308 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||||| || | |||| | ||||| |||||||||||||||||||| ||||| || ||||| Sbjct 3010309 ACACGGCGTTAGAAACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGAT 3010368 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 | ||||||||||| || ||||| || | |||| | || | || | | || || || Sbjct 3010369 AATGGGCAACAACGAATCCTTCGAGCCGTACACCACGAATATCTATACACGCCGCGTTCT 3010428 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGT 95255 | |||| ||||||| || ||||| | ||||| | ||||| || || |||| | Sbjct 3010429 CTCCGGCGAATTCCAGGTGGTCAACCATCACCTATTGCGGGATCTAACTGAGCTGGACTT 3010488 Query 95256 GTGGGGTGACAAGGTCAAGAACCA 95279 ||||| ||| | | |||||||| Sbjct 3010489 GTGGGATGATGACATGAAGAACCA 3010512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494691407850360