Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq4685 100 2e-16 seq4554 93.3 3e-14 >seq4685 Length=792119 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| |||||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 729185 ACGGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 729126 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | Sbjct 729125 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 729066 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || || | || |||||||||| | | ||||| ||||| || |||||| || | | Sbjct 729065 GACCATCGCGTGCACCACAAGTTCACGGACACACACGCCGATCCCCACAACTCCCGCCGC 729006 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || || | ||| | ||| |||||||||| ||| | ||| ||||||| |||| Sbjct 729005 GGCTTTTTCTTCGCCCACATGGGATGGCTGATGTGCAAGAAGCACCCCGATGTGA 728951 Score = 89.7 bits (98), Expect = 4e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || Sbjct 728591 GGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGCTG 728532 Query 108949 GG 108950 || Sbjct 728531 GG 728530 >seq4554 Length=542996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 252/381 (66%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| ||||| | || |||||||||||||| || ||| || || || || || Sbjct 470551 TGGGTGCGTGATCATCGAGTCCACCACAAGTACTCGGAGACGGATGCAGATCCGCATAAT 470492 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 |||||| | || |||| || | || ||||| ||||| |||||| |||| | || || Sbjct 470491 GCCAACCGTGGCTTCTTCTTTGCCCATGTGGGCTGGCTGATGATGCTCAAGCATCCGGAT 470432 Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACT--CCGATCCGGTGGTA 108642 ||| | || | ||||| |||| |||||||| | |||| || | ||||| ||| || Sbjct 470431 GTGCT-ACGTCGTGGTCGTCAAATTGACATGACCG--ATATTCTGGCTGATCCCGTGATA 470375 Query 108643 GTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTTTGTTATACCGGTG 108702 | || ||||||||||| || | || | || |||| ||| | | || Sbjct 470374 CGTTTCCATCAGAAGTACTTTATACCATTGAAGACCTTTTTCTGCTTTATCCTGCCCACC 470315 Query 108703 TGGGTGCCGGTCGCGTGTTGGGGGGAGACGTTCGCGGCGGCGTTCCTGTCTCAGGCCGTT 108762 | | |||||| || ||||| ||||| | ||| ||| ||| | ||| || Sbjct 470314 GTGATCCCGGTCTACTGCTGGGGTGAGACCTGGGCGCTGGCCTTCATCCAGCAGTGTCTT 470255 Query 108763 CTGAGGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTAC 108822 | | |||| || ||| |||||||||||| ||| || || || ||||||| Sbjct 470254 TTCCGTTACGTGAGCAGCCTGAACTTTACGTGGTCGGTGAACAGCGCCGCCCACATGTGG 470195 Query 108823 GGCGACCGTCCGTTCGACAAG 108843 || |||||| | |||||| Sbjct 470194 GGATCCCGTCCATATGACAAG 470174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381748879667304