Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq1486 150 7e-32 seq4902 149 2e-31 seq4198 145 3e-30 seq4797 122 3e-23 seq3455 102 3e-17 seq4583 95.1 5e-15 >seq1486 Length=18552 Score = 150 bits (166), Expect = 7e-32 Identities = 288/421 (68%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 34330 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 764 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 705 Query 34331 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 34387 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 704 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 645 Query 34388 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 34447 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 644 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 585 Query 34448 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 34505 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 584 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 525 Query 34506 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 34564 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 524 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 466 Query 34565 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 34620 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 465 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 409 Query 34621 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 34680 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 408 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 349 Query 34681 C 34681 | Sbjct 348 C 348 Score = 150 bits (166), Expect = 7e-32 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 34330 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 17790 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 17849 Query 34331 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 34387 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 17850 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 17909 Query 34388 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 34447 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 17910 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 17969 Query 34448 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 34505 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 17970 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 18029 Query 34506 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 34564 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 18030 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 18088 Query 34565 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 34620 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 18089 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 18145 Query 34621 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 34680 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 18146 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 18205 Query 34681 CTGGTCAGG 34689 | || ||| Sbjct 18206 CCTGTTAGG 18214 >seq4902 Length=30050 Score = 149 bits (164), Expect = 2e-31 Identities = 281/408 (69%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 34284 ACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG---CTCT 34340 ||||||| ||||| | ||||| |||||||| || | | | ||||||||| | || Sbjct 14799 ACCAGTCGACCCATTTAAGTGTTGCCAGTTCGACCGCGTCCCTGTTTTTCCACGGCCCCT 14858 Query 34341 TACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCAT 34400 |||| || | || | ||||||||| || || ||| |||| |||| |||||||||| Sbjct 14859 GCCGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCCAGGGCGTTGTCAT 14918 Query 34401 ACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTAT 34460 | || || || ||| || || || | | || ||||| |||| | ||| | Sbjct 14919 AGGAATCCCCAACACTACCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGT 14978 Query 34461 AGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG----TGCC--AGACG 34514 || | |||||||| ||| |||| || |||||| | | || || | Sbjct 14979 AGCGAATGGACACATATTGACAGCCGCGGTCCGAATGATGGGTCACTTTTCCCTCAGGCT 15038 Query 34515 GACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT-TCCATAGAC 34573 | | || |||| ||||||||||| || ||||||| ||| |||| | | || Sbjct 15039 GCCTCTGG---CACAGAGCCTGCTCCAGGGCGTCCAGCATGAA-GTCGGTATGGGCAGTG 15094 Query 34574 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAG 34633 || ||||| ||||| ||||| || | |||||||||||||||||| || |||||||| Sbjct 15095 GACGAGACGCGCCAGCCCACAATCACGCGGGCAAACACATCAATGATGAAAGCCACATAC 15154 Query 34634 ACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 34681 || ||||||||||||||| |||||||||||||| | ||||| ||| Sbjct 15155 ACAAAGCCCTGCCATGTGGAAACGTAAGTAAAATCCGAAACCCAGAGC 15202 >seq4198 Length=487851 Score = 145 bits (160), Expect = 3e-30 Identities = 279/408 (68%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 34330 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 350470 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 350529 Query 34331 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 34387 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 350530 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 350589 Query 34388 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 34447 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 350590 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 350649 Query 34448 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 34505 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 350650 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 350709 Query 34506 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 34564 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 350710 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 350768 Query 34565 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 34620 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 350769 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 350825 Query 34621 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATC 34668 || || ||||| || ||||||||||| ||| || ||||||||||| Sbjct 350826 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATC 350873 >seq4797 Length=43377 Score = 122 bits (134), Expect = 3e-23 Identities = 287/424 (68%), Gaps = 22/424 (5%) Strand=Plus/Minus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 34330 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 10443 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 10384 Query 34331 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 34387 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 10383 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 10324 Query 34388 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 34447 | ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 10323 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 10264 Query 34448 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 34505 |||| | ||| ||| | |||||||| ||| |||| ||| || ||| | Sbjct 10263 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 10204 Query 34506 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 34561 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 10203 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 10148 Query 34562 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 34616 | | || || || |||| || ||||| ||||| || | ||| ||||| || |||| Sbjct 10147 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 10092 Query 34617 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 34676 |||| || |||||||| || ||||||||||| ||| || || || ||||| | |||| Sbjct 10091 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 10032 Query 34677 ACAG 34680 |||| Sbjct 10031 ACAG 10028 Score = 114 bits (126), Expect = 5e-21 Identities = 286/424 (67%), Gaps = 23/424 (5%) Strand=Plus/Minus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 34330 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 1284 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 1225 Query 34331 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 34387 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 1224 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 1165 Query 34388 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 34447 | ||||| ||||| || || || ||| || || || | | ||| |||| Sbjct 1164 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCG-CTTCAGCC 1106 Query 34448 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 34505 |||| | ||| ||| | ||| |||| ||| |||| ||| || ||| | Sbjct 1105 AGTCTTTGCGTGTAGCGAATGGACGCATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 1046 Query 34506 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 34561 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 1045 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 990 Query 34562 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 34616 | | || || || |||| || ||||| ||||| || | ||| ||||| || |||| Sbjct 989 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 934 Query 34617 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 34676 |||| || |||||||| || ||||||||||| ||| || || || ||||| | |||| Sbjct 933 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 874 Query 34677 ACAG 34680 |||| Sbjct 873 ACAG 870 >seq3455 Length=1029 Score = 102 bits (112), Expect = 3e-17 Identities = 284/425 (67%), Gaps = 23/425 (5%) Strand=Plus/Plus Query 34271 CGTCGATTGTTATACCAGTCCACCCACGTTA-GTGTGGCCAGTTCCACTTCTGCACGGTT 34329 || ||||| || ||||||| ||||| ||| |||| ||||| || || || | | ||| Sbjct 17 CGCCGATTATTGAACCAGTCGACCCAGTTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTT 76 Query 34330 TTTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGC 34386 |||||| | || |||| || | || ||||||||| || || ||| |||| || Sbjct 77 TTTCCATGGTCCCTGCCGGTAGATCAATTCGATTTTGTAAAGTCCGTTAATGGTCTCCGC 136 Query 34387 CATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTT 34446 || ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 137 CAAAGCGTTATCATAGGAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGC 196 Query 34447 TAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG- 34505 |||| | ||| ||| | |||||||| ||| | || ||| || ||| | Sbjct 197 CAGTCTTTGCGTGTAGCGAATGGACACATATTGACATCCGCGGTCGGAATGGTGGGTCAC 256 Query 34506 ---TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 34560 | || || | | | || |||| |||||||| || |||||||||||||| || Sbjct 257 TTTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCGAGGGCATCCAGCACGAA-GT 312 Query 34561 CGTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCA 34615 || | || || || |||| || ||||| ||||| || | ||| || || |||||| Sbjct 313 CGGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCGAATACATCA 368 Query 34616 ATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACC 34675 ||||| || | | ||| || ||||||||||| ||| || || || ||||| | ||| Sbjct 369 ATGATGAAGACGAAATAAACAAAGCCCTGCCAGGTGGAAACATACGTGAAATCCGAAACC 428 Query 34676 CACAG 34680 ||||| Sbjct 429 CACAG 433 >seq4583 Length=779074 Score = 95.1 bits (104), Expect = 5e-15 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 36214 GTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTG 36273 || ||||| ||||||||||||||| || |||||| || || || |||||||| || Sbjct 68577 GTCGGGATCAGCCAGGGCTGGAAAATGACCGGGGCTATCAAGACGCTGGAGCGCAAGCTA 68636 Query 36274 GCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCC 36333 || || || | | ||||| | | || | ||||| ||| ||||||||||| Sbjct 68637 GCAGATGGCACGTTTTCCCATGGGGCACGTCCGATCATGGCTTGGGCGGTCGGCAATGCA 68696 Query 36334 CGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAG---GCCAGTGGACGGGGA 36390 || | || |||| || ||| || |||||||| ||| || ||||| | Sbjct 68697 AAGGCGCAGGCTAAGGGCAACAATATCGAAATCACCAAGCAGATGGCAGGTGGAAAG--- 68753 Query 36391 AAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGAA 36450 ||||| |||||||||||||||||||| |||| || || ||| || ||||||||| Sbjct 68754 AAAATCGACCCGCTGATGGCGCTGTTTGATGCCGTGGCCTGCATGAGCCGGAACCCGGAA 68813 Query 36451 CC 36452 || Sbjct 68814 CC 68815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198733147408108