Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_012530.1
Length=142111
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 109 5e-19
>seq5094
Length=366253
Score = 109 bits (120), Expect = 5e-19
Identities = 425/661 (64%), Gaps = 13/661 (2%)
Strand=Plus/Minus
Query 36610 AGATACATCAAGTAAGTTACAAACAGTACCCAATTTGCATCCCCTTGGAAGGCCGTGATT 36669
||||||| | ||| |||| || | ||||||||| | ||||| | || || |||
Sbjct 131600 AGATACAAAATGTAGGTTAAGAATAACGTCCAATTTGCTCCACCTTGATAAGCAGTAATT 131541
Query 36670 CCCCAAAGAACAACTGACATGATTCCTTGAATAGTCCAGCAAATATAGGATTCAGAAAAT 36729
||||| |||| || ||| | || |||||| | |||| || ||| | ||| ||||
Sbjct 131540 CCCCATAGAATAATTGAGAATATCCCTTGAGCAAGCCAGAAATAATAAGTATCACGAAAT 131481
Query 36730 CTTAGTGTGGTCAACATAGCTCCTGTAATACCAATCGCCGCTGCAAGTGAGTCCGTAATT 36789
|| | || || || | |||||||||||| ||||| | || |||| || || |
Sbjct 131480 CTCAAAGTAGTTAAAAGAGCTCCTGTAATTCCAATTGTTGCAGCAAAGCTATCTACAAAT 131421
Query 36790 GGTCGGGGACTAATGAAAATATG--TGTATCAGAATAGTAAAGAATTCCAAAGACAGCAA 36847
||||| |||||| | | |||| ||| || || || | || ||| || || |||
Sbjct 131420 GGTCGTGGACTA-TCACTATATCCATGT-TCCCAAGCATATAAAACTCCTAATACTACAA 131363
Query 36848 AGAAGAAAATGCCTGTCAAAACCCAGTTGCGAA----TGCCTTTACCTTCCTCTGCA-AG 36902
||||| | ||||||| |||| || | | ||| | || | || | ||
Sbjct 131362 CAAAGAATAGCGCTGTCAACCCCCAATTCATCAGTGTTTTCTTAAGATTACCCTTAATAG 131303
Query 36903 AAA---TCTA-ACCTTTTTATCAACATCTTTTGCCCAAGATGGTAAAAGCAAAATAGGAA 36958
| ||| | | ||| ||||| | | |||||| || | ||||||| ||||
Sbjct 131302 TTAATTTCTTGATGTGTTTGTCAACGTTAGTAGCCCAACTAGGAATTAGCAAAACCGGAA 131243
Query 36959 TATCTAACAAAATAATATATGTTGCTTGTAGAACTACGTCATTGTAATTTTTAGCCCCTA 37018
||||||| | | ||| ||||| | ||||||| | ||||||||||| ||||| |
Sbjct 131242 TATCTAAAAGTACAATGTATGTAGTCTGTAGAATAATATCATTGTAATTCTTAGCGGTAA 131183
Query 37019 CCGCAACAATAATGTAAATGATCGCGCTAATTAATCCAAACATACCATTAACGGGTCGTG 37078
||||| ||| ||||| | || || | ||| ||||| || || || | ||| |
Sbjct 131182 AAGCAACGTAAATATAAATCAAAGCACTGACTAAACCAAAAATTCCGTTTAGTGGTTTAG 131123
Query 37079 CATTTGTAGTGGCAACAGTTGTAGTAAACCCTAATACCCCTGCTGCTAAGGTTAATAATG 37138
||| ||| | | || ||| || ||||| || | | || ||| | ||| | | ||
Sbjct 131122 TATTGGTAATAGAAATAGTGGTGGTAAATCCAAGCATTCCAGCTAACATGGTCATAATTG 131063
Query 37139 CCACCCTTGTAATTGGCTGAGCTACTGTCATGCCTAAAATGATACCAATACCAAGAAACA 37198
| | ||||||||||| | || || || ||| | || | ||||| | |
Sbjct 131062 CAATAAACGTAATTGGCTGTGTAACGGTTGATCCAGCAATTACTCCTAAACCAAACAGAA 131003
Query 37199 ATAATGAATAACTAGCTGCTGTCCAGCCCTTCATTTGTTCAATATACCAGCTTGGCTTAA 37258
||| |||| |||| |||| |||||||| || | || |||||| |||||||| |
Sbjct 131002 GTAACAAATAGCTAGTAAAACTCCACCCCTTCATCTGATTAACATACCAACTTGGCTTTA 130943
Query 37259 G 37259
|
Sbjct 130942 G 130942
Score = 86.0 bits (94), Expect = 6e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 39064 TAAAAATAGAATCCTCATAAATTGATCGGTCAAGGACATTATTATCTTGTTTCATGGCTT 39123
|||| | || ||| || ||||| || |||||||| ||||||||||||||||| | || |
Sbjct 344823 TAAATAAAGCATCTTCGTAAATCGAACGGTCAAGTACATTATTATCTTGTTTTAGTGCCT 344764
Query 39124 CTTTAATCATCTTAAAGCGTCTGTTCAAGAAAAACACCTGCAATAAAAATGCATA 39178
|||||||||| || ||| | || |||||| | | ||| | |||||| ||||
Sbjct 344763 TTTTAATCATCGAGAACCGTTTATTTAAGAAATAAATCTGAAGTAAAAAGCCATA 344709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 454597984519560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |