Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_012530.1 Length=142111 Score E Sequences producing significant alignments: (Bits) Value seq5094 109 5e-19 >seq5094 Length=366253 Score = 109 bits (120), Expect = 5e-19 Identities = 425/661 (64%), Gaps = 13/661 (2%) Strand=Plus/Minus Query 36610 AGATACATCAAGTAAGTTACAAACAGTACCCAATTTGCATCCCCTTGGAAGGCCGTGATT 36669 ||||||| | ||| |||| || | ||||||||| | ||||| | || || ||| Sbjct 131600 AGATACAAAATGTAGGTTAAGAATAACGTCCAATTTGCTCCACCTTGATAAGCAGTAATT 131541 Query 36670 CCCCAAAGAACAACTGACATGATTCCTTGAATAGTCCAGCAAATATAGGATTCAGAAAAT 36729 ||||| |||| || ||| | || |||||| | |||| || ||| | ||| |||| Sbjct 131540 CCCCATAGAATAATTGAGAATATCCCTTGAGCAAGCCAGAAATAATAAGTATCACGAAAT 131481 Query 36730 CTTAGTGTGGTCAACATAGCTCCTGTAATACCAATCGCCGCTGCAAGTGAGTCCGTAATT 36789 || | || || || | |||||||||||| ||||| | || |||| || || | Sbjct 131480 CTCAAAGTAGTTAAAAGAGCTCCTGTAATTCCAATTGTTGCAGCAAAGCTATCTACAAAT 131421 Query 36790 GGTCGGGGACTAATGAAAATATG--TGTATCAGAATAGTAAAGAATTCCAAAGACAGCAA 36847 ||||| |||||| | | |||| ||| || || || | || ||| || || ||| Sbjct 131420 GGTCGTGGACTA-TCACTATATCCATGT-TCCCAAGCATATAAAACTCCTAATACTACAA 131363 Query 36848 AGAAGAAAATGCCTGTCAAAACCCAGTTGCGAA----TGCCTTTACCTTCCTCTGCA-AG 36902 ||||| | ||||||| |||| || | | ||| | || | || | || Sbjct 131362 CAAAGAATAGCGCTGTCAACCCCCAATTCATCAGTGTTTTCTTAAGATTACCCTTAATAG 131303 Query 36903 AAA---TCTA-ACCTTTTTATCAACATCTTTTGCCCAAGATGGTAAAAGCAAAATAGGAA 36958 | ||| | | ||| ||||| | | |||||| || | ||||||| |||| Sbjct 131302 TTAATTTCTTGATGTGTTTGTCAACGTTAGTAGCCCAACTAGGAATTAGCAAAACCGGAA 131243 Query 36959 TATCTAACAAAATAATATATGTTGCTTGTAGAACTACGTCATTGTAATTTTTAGCCCCTA 37018 ||||||| | | ||| ||||| | ||||||| | ||||||||||| ||||| | Sbjct 131242 TATCTAAAAGTACAATGTATGTAGTCTGTAGAATAATATCATTGTAATTCTTAGCGGTAA 131183 Query 37019 CCGCAACAATAATGTAAATGATCGCGCTAATTAATCCAAACATACCATTAACGGGTCGTG 37078 ||||| ||| ||||| | || || | ||| ||||| || || || | ||| | Sbjct 131182 AAGCAACGTAAATATAAATCAAAGCACTGACTAAACCAAAAATTCCGTTTAGTGGTTTAG 131123 Query 37079 CATTTGTAGTGGCAACAGTTGTAGTAAACCCTAATACCCCTGCTGCTAAGGTTAATAATG 37138 ||| ||| | | || ||| || ||||| || | | || ||| | ||| | | || Sbjct 131122 TATTGGTAATAGAAATAGTGGTGGTAAATCCAAGCATTCCAGCTAACATGGTCATAATTG 131063 Query 37139 CCACCCTTGTAATTGGCTGAGCTACTGTCATGCCTAAAATGATACCAATACCAAGAAACA 37198 | | ||||||||||| | || || || ||| | || | ||||| | | Sbjct 131062 CAATAAACGTAATTGGCTGTGTAACGGTTGATCCAGCAATTACTCCTAAACCAAACAGAA 131003 Query 37199 ATAATGAATAACTAGCTGCTGTCCAGCCCTTCATTTGTTCAATATACCAGCTTGGCTTAA 37258 ||| |||| |||| |||| |||||||| || | || |||||| |||||||| | Sbjct 131002 GTAACAAATAGCTAGTAAAACTCCACCCCTTCATCTGATTAACATACCAACTTGGCTTTA 130943 Query 37259 G 37259 | Sbjct 130942 G 130942 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 39064 TAAAAATAGAATCCTCATAAATTGATCGGTCAAGGACATTATTATCTTGTTTCATGGCTT 39123 |||| | || ||| || ||||| || |||||||| ||||||||||||||||| | || | Sbjct 344823 TAAATAAAGCATCTTCGTAAATCGAACGGTCAAGTACATTATTATCTTGTTTTAGTGCCT 344764 Query 39124 CTTTAATCATCTTAAAGCGTCTGTTCAAGAAAAACACCTGCAATAAAAATGCATA 39178 |||||||||| || ||| | || |||||| | | ||| | |||||| |||| Sbjct 344763 TTTTAATCATCGAGAACCGTTTATTTAAGAAATAAATCTGAAGTAAAAAGCCATA 344709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454597984519560