Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4765 273 2e-68 seq4644 95.1 1e-14 >seq4765 Length=3541379 Score = 273 bits (302), Expect = 2e-68 Identities = 1147/1797 (64%), Gaps = 44/1797 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| | ||||| || || || ||||| |||||||| || || || | || || Sbjct 3009023 AAGATTGCCGAGCGGCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAA 3009082 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| || || ||| ||||| |||| | || ||||| ||||| Sbjct 3009083 GACATCGATGCCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCC 3009142 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| |||||||||| | |||||| ||| ||| | || || || || | || Sbjct 3009143 TCGCCCACCCTGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTG 3009202 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 ||| || || ||| || || | | | | || | || || |||| Sbjct 3009203 ACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATC 3009262 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | |||||||| ||| |||| || || | | | | | || | | Sbjct 3009263 TCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCACTTCC 3009322 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 || | |||| | || | | || || |||| ||||||||||||| | ||| || Sbjct 3009323 ATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAAT 3009382 Query 123258 GCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCTA 123314 | | ||| |||| |||||||| |||||| || || || | || |||||| | Sbjct 3009383 GTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTG 3009442 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGGCGGA 123373 || || |||||| ||||| | ||| || || || | |||| | |||| || ||| Sbjct 3009443 GAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAG-AACACCGGCAAGGA 3009501 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || || || |||||| | || || || | ||| |||||||| | |||||| || Sbjct 3009502 GGAGAATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCG 3009561 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGA 123493 ||| | | | | ||||| || ||||| || | |||||||||| || || Sbjct 3009562 CGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGA 3009621 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGA-----AGGCAAA 123548 || | ||| | ||||||| || ||||| |||||||| ||| |||| || Sbjct 3009622 TGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAA 3009681 Query 123549 CAGGTTAGTCA-GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 || ||| | || || | | | || | |||| || ||||| | || || || Sbjct 3009682 TCGGACAGTTAAGGCTCAGTCCC-TG--TGGTTCGCC---ATCATCGAGGCGCAGGTGGA 3009735 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 || || | ||||||||||||| ||| || || ||||||||||| | ||||||| || Sbjct 3009736 GACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAA 3009795 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727 |||| || || || || || ||||| ||| | ||||| |||| ||| | |||| Sbjct 3009796 TGTGGGCACCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGA 3009855 Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCGAAAAC 123782 | | ||||| || || |||| || || | || | || || | ||| Sbjct 3009856 CGAGATCGCCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGCCCGAAAA 3009915 Query 123783 GGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAAC 123842 | || | |||| | | ||| || | || || ||||| | |||||| ||||| Sbjct 3009916 GACG--TACGATTTTAAGAAGCTGAAGGAGGTCACCAAGACTGTGGCCAAGAATCTGAAC 3009973 Query 123843 AAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACAC 123902 || ||||| || | || | |||||| || ||| || | || ||| ||| || Sbjct 3009974 AAGATTATTGACATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCAT 3010033 Query 123903 AGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCG 123962 | || | || | ||| |||| || | ||||| || || | || || | | || Sbjct 3010034 CGCCCCATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCC 3010093 Query 123963 TACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGC 124022 ||||||||||| || || | || ||| || || ||||| || ||||| || Sbjct 3010094 TACGAAAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGA 3010153 Query 124023 GCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGC 124082 || |||| || || || ||||| || | | | ||| |||| |||| |||| |||| Sbjct 3010154 GCCCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGC 3010213 Query 124083 AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTG 124142 ||||| | |||| || || | ||||||||||||||| | ||| || || | Sbjct 3010214 AGCCCCGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTC 3010273 Query 124143 TGGGACTGGAGCGTTTTAAAAC--AACGCAT--ATC--GACGCACGGTTTGCGTAACTCG 124196 ||||||||| || ||| | || | || ||| || ||||| | | ||||| Sbjct 3010274 TGGGACTGG-GC-----AAAGCTGAAGGAATCGATCAAGAAACACGGCGTTAGAAACTCT 3010327 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| | ||||| |||||| |||||| ||||||| || || | || |||||||||||| Sbjct 3010328 CTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCC 3010387 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 |||||||||| ||| | ||| | || || || || | ||||||| || || ||| Sbjct 3010388 TTCGAGCCGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCGAATTCCAGGTG 3010447 Query 124317 ATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGC 124376 | || ||||| | || || | | | | | |||| ||||| ||||| Sbjct 3010448 GTCAACCATCACCTATTGCGGGATCTAACTGAGCTGGACTTGTGGGATGATGACATGAAG 3010507 Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTC 124436 ||| | || ||| | | ||||| | ||| |||| | ||||| | | || Sbjct 3010508 AACCAGATCATTTCCAGCCGTGGCTCTATCCAGAATATCGAGGCCATTCCCCAGAATGTT 3010567 Query 124437 AAGCAACTGTACAAAACCGTGTGGGAAA----TGAAAAATAAACGATTAATTGAAATGGC 124492 | |||||||| || || ||||| | || |||| || |||| ||||||| Sbjct 3010568 CGCGATCTGTACAAGACGGTTTGGGAGATCTCTGTGAAATCCACCATTA----AAATGGC 3010623 Query 124493 CGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACC 124552 || || || || |||| | ||||| |||||||| || ||| | ||| || || || Sbjct 3010624 CGCAGATCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAACATTCATGTGGCTGAGCC 3010683 Query 124553 CACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGG 124612 || ||| | | |||| ||||||| | || |||||| || || ||||| || Sbjct 3010684 CAACTATGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGCTGGCCTTAAAACCGG 3010743 Query 124613 CATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 ||||||||| | | || || ||||| ||| ||||||| || || ||||||||||| Sbjct 3010744 GATGTATTACCTCCGCACGAAGCCGGCTGCCAATGCCATACAGTTCACCGTCGACAA 3010800 >seq4644 Length=1132839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | ||| | || || ||||| ||||| ||||| || || ||| Sbjct 752765 ATTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 752706 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || ||| | ||||| || ||||| || || Sbjct 752705 GAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 752646 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| ||||| || | || | ||||||||| | ||| Sbjct 752645 GGTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCC 752586 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | || || || || || || || ||||| || ||||| Sbjct 752585 ACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| | |||||| ||||| ||||| ||||| || || ||| Sbjct 752537 ATTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCG 752478 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || ||| | ||||| || ||||| || || Sbjct 752477 GAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGA 752418 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || || | || | ||||||||| | ||| Sbjct 752417 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCC 752358 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || ||||| || || || ||||| || ||||| Sbjct 752357 ACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451974153144360