Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 273 2e-68
seq4644 95.1 1e-14
>seq4765
Length=3541379
Score = 273 bits (302), Expect = 2e-68
Identities = 1147/1797 (64%), Gaps = 44/1797 (2%)
Strand=Plus/Plus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||| | ||||| || || || ||||| |||||||| || || || | || ||
Sbjct 3009023 AAGATTGCCGAGCGGCCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAA 3009082
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
|||||||| ||| || || ||| ||||| |||| | || ||||| |||||
Sbjct 3009083 GACATCGATGCCGCTGTGGAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCC 3009142
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
||||| |||||||||| | |||||| ||| ||| | || || || || | ||
Sbjct 3009143 TCGCCCACCCTGTTCGCCGCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTG 3009202
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137
||| || || ||| || || | | | | || | || || ||||
Sbjct 3009203 ACCATGACATCGGATTCGATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATC 3009262
Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197
||||| | | |||||||| ||| |||| || || | | | | | || | |
Sbjct 3009263 TCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCACTTCC 3009322
Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257
|| | |||| | || | | || || |||| ||||||||||||| | ||| ||
Sbjct 3009323 ATATGTGGCACAAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAAT 3009382
Query 123258 GCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCTA 123314
| | ||| |||| |||||||| |||||| || || || | || |||||| |
Sbjct 3009383 GTGGCTCGGTACGTGGACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTG 3009442
Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGGCGGA 123373
|| || |||||| ||||| | ||| || || || | |||| | |||| || |||
Sbjct 3009443 GAGCCCTGGCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAG-AACACCGGCAAGGA 3009501
Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433
|| || || |||||| | || || || | ||| |||||||| | |||||| ||
Sbjct 3009502 GGAGAATCGTGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCG 3009561
Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGA 123493
||| | | | | ||||| || ||||| || | |||||||||| || ||
Sbjct 3009562 CGTCGAGGCGAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGA 3009621
Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGA-----AGGCAAA 123548
|| | ||| | ||||||| || ||||| |||||||| ||| |||| ||
Sbjct 3009622 TGTGTGGGGCGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAA 3009681
Query 123549 CAGGTTAGTCA-GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607
|| ||| | || || | | | || | |||| || ||||| | || || ||
Sbjct 3009682 TCGGACAGTTAAGGCTCAGTCCC-TG--TGGTTCGCC---ATCATCGAGGCGCAGGTGGA 3009735
Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667
|| || | ||||||||||||| ||| || || ||||||||||| | ||||||| ||
Sbjct 3009736 GACTGGCAATCCGTACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAA 3009795
Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727
|||| || || || || || ||||| ||| | ||||| |||| ||| | ||||
Sbjct 3009796 TGTGGGCACCATCAAGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGA 3009855
Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCGAAAAC 123782
| | ||||| || || |||| || || | || | || || | |||
Sbjct 3009856 CGAGATCGCCGTCTGCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGCCCGAAAA 3009915
Query 123783 GGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAAC 123842
| || | |||| | | ||| || | || || ||||| | |||||| |||||
Sbjct 3009916 GACG--TACGATTTTAAGAAGCTGAAGGAGGTCACCAAGACTGTGGCCAAGAATCTGAAC 3009973
Query 123843 AAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACAC 123902
|| ||||| || | || | |||||| || ||| || | || ||| ||| ||
Sbjct 3009974 AAGATTATTGACATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCAT 3010033
Query 123903 AGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCG 123962
| || | || | ||| |||| || | ||||| || || | || || | | ||
Sbjct 3010034 CGCCCCATTGGCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCC 3010093
Query 123963 TACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGC 124022
||||||||||| || || | || ||| || || ||||| || ||||| ||
Sbjct 3010094 TACGAAAGCGAGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGA 3010153
Query 124023 GCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGC 124082
|| |||| || || || ||||| || | | | ||| |||| |||| |||| ||||
Sbjct 3010154 GCCCTGGAAGCCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGC 3010213
Query 124083 AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTG 124142
||||| | |||| || || | ||||||||||||||| | ||| || || |
Sbjct 3010214 AGCCCCGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTC 3010273
Query 124143 TGGGACTGGAGCGTTTTAAAAC--AACGCAT--ATC--GACGCACGGTTTGCGTAACTCG 124196
||||||||| || ||| | || | || ||| || ||||| | | |||||
Sbjct 3010274 TGGGACTGG-GC-----AAAGCTGAAGGAATCGATCAAGAAACACGGCGTTAGAAACTCT 3010327
Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256
||| | ||||| |||||| |||||| ||||||| || || | || ||||||||||||
Sbjct 3010328 CTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCC 3010387
Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316
|||||||||| ||| | ||| | || || || || | ||||||| || || |||
Sbjct 3010388 TTCGAGCCGTACACCACGAATATCTATACACGCCGCGTTCTCTCCGGCGAATTCCAGGTG 3010447
Query 124317 ATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGC 124376
| || ||||| | || || | | | | | |||| ||||| |||||
Sbjct 3010448 GTCAACCATCACCTATTGCGGGATCTAACTGAGCTGGACTTGTGGGATGATGACATGAAG 3010507
Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTC 124436
||| | || ||| | | ||||| | ||| |||| | ||||| | | ||
Sbjct 3010508 AACCAGATCATTTCCAGCCGTGGCTCTATCCAGAATATCGAGGCCATTCCCCAGAATGTT 3010567
Query 124437 AAGCAACTGTACAAAACCGTGTGGGAAA----TGAAAAATAAACGATTAATTGAAATGGC 124492
| |||||||| || || ||||| | || |||| || |||| |||||||
Sbjct 3010568 CGCGATCTGTACAAGACGGTTTGGGAGATCTCTGTGAAATCCACCATTA----AAATGGC 3010623
Query 124493 CGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACC 124552
|| || || || |||| | ||||| |||||||| || ||| | ||| || || ||
Sbjct 3010624 CGCAGATCGCGGTGCGTTTATCGATCAGAGTCAATCGTTCAACATTCATGTGGCTGAGCC 3010683
Query 124553 CACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGG 124612
|| ||| | | |||| ||||||| | || |||||| || || ||||| ||
Sbjct 3010684 CAACTATGGCAAGCTGACATCCATACACTTTTACTCGTGGAAGGCTGGCCTTAAAACCGG 3010743
Query 124613 CATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669
||||||||| | | || || ||||| ||| ||||||| || || |||||||||||
Sbjct 3010744 GATGTATTACCTCCGCACGAAGCCGGCTGCCAATGCCATACAGTTCACCGTCGACAA 3010800
>seq4644
Length=1132839
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||||||||| | | ||| | || || ||||| ||||| ||||| || || |||
Sbjct 752765 ATTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 752706
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || |||| || || || ||| | ||||| || ||||| || ||
Sbjct 752705 GAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 752646
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || ||||| ||||| || | || | ||||||||| | |||
Sbjct 752645 GGTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCC 752586
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | || || || || || || || ||||| || |||||
Sbjct 752585 ACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||||||||| || | | ||| | |||||| ||||| ||||| ||||| || || |||
Sbjct 752537 ATTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCG 752478
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || |||| || || || ||| | ||||| || ||||| || ||
Sbjct 752477 GAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGA 752418
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || || || || || || | || | ||||||||| | |||
Sbjct 752417 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCC 752358
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || | || || ||||| || || || ||||| || |||||
Sbjct 752357 ACCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451974153144360
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